Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03255 and LRK53_RS03260 are separated by 87 nucleotides LRK53_RS03260 and LRK53_RS03265 overlap by 4 nucleotides
LRK53_RS03255: LRK53_RS03255 - TonB-dependent receptor, at 764,885 to 767,176
_RS03255
LRK53_RS03260: LRK53_RS03260 - lysoplasmalogenase, at 767,264 to 767,986
_RS03260
LRK53_RS03265: LRK53_RS03265 - sterol desaturase family protein, at 767,983 to 769,251
_RS03265
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 766.331 kb on + strand, within LRK53_RS03255 at 766.388 kb on + strand, within LRK53_RS03255 at 766.388 kb on + strand, within LRK53_RS03255 at 766.388 kb on + strand, within LRK53_RS03255 at 766.389 kb on - strand, within LRK53_RS03255 at 766.389 kb on - strand, within LRK53_RS03255 at 766.424 kb on + strand, within LRK53_RS03255 at 766.589 kb on + strand, within LRK53_RS03255 at 766.589 kb on + strand, within LRK53_RS03255 at 766.590 kb on - strand, within LRK53_RS03255 at 766.664 kb on + strand, within LRK53_RS03255 at 766.742 kb on + strand, within LRK53_RS03255 at 766.742 kb on + strand, within LRK53_RS03255 at 766.743 kb on - strand, within LRK53_RS03255 at 766.758 kb on - strand, within LRK53_RS03255 at 766.773 kb on - strand, within LRK53_RS03255 at 766.785 kb on - strand, within LRK53_RS03255 at 766.785 kb on - strand, within LRK53_RS03255 at 766.907 kb on + strand, within LRK53_RS03255 at 766.907 kb on + strand, within LRK53_RS03255 at 766.908 kb on - strand, within LRK53_RS03255 at 766.922 kb on + strand, within LRK53_RS03255 at 766.922 kb on + strand, within LRK53_RS03255 at 766.922 kb on + strand, within LRK53_RS03255 at 766.923 kb on - strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.925 kb on + strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.926 kb on - strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.931 kb on + strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.932 kb on - strand, within LRK53_RS03255 at 766.951 kb on - strand at 766.958 kb on + strand at 766.959 kb on - strand at 766.959 kb on - strand at 767.060 kb on + strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.061 kb on - strand at 767.063 kb on + strand at 767.063 kb on + strand at 767.064 kb on - strand at 767.064 kb on - strand at 767.114 kb on + strand at 767.114 kb on + strand at 767.114 kb on + strand at 767.115 kb on - strand at 767.304 kb on + strand at 767.305 kb on - strand at 767.493 kb on + strand, within LRK53_RS03260 at 767.493 kb on + strand, within LRK53_RS03260 at 767.494 kb on - strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.529 kb on + strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.530 kb on - strand, within LRK53_RS03260 at 767.736 kb on - strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.794 kb on + strand, within LRK53_RS03260 at 767.795 kb on - strand, within LRK53_RS03260 at 767.795 kb on - strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.841 kb on + strand, within LRK53_RS03260 at 767.842 kb on - strand, within LRK53_RS03260 at 767.842 kb on - strand, within LRK53_RS03260 at 767.918 kb on + strand at 767.918 kb on + strand at 767.918 kb on + strand at 767.919 kb on - strand at 767.919 kb on - strand at 767.919 kb on - strand at 767.919 kb on - strand at 767.921 kb on + strand at 767.921 kb on + strand at 767.921 kb on + strand at 767.921 kb on + strand at 767.922 kb on - strand at 768.082 kb on + strand at 768.082 kb on + strand at 768.172 kb on + strand, within LRK53_RS03265 at 768.172 kb on + strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.173 kb on - strand, within LRK53_RS03265 at 768.253 kb on + strand, within LRK53_RS03265 at 768.253 kb on + strand, within LRK53_RS03265 at 768.254 kb on - strand, within LRK53_RS03265 at 768.254 kb on - strand, within LRK53_RS03265 at 768.254 kb on - strand, within LRK53_RS03265 at 768.265 kb on + strand, within LRK53_RS03265 at 768.265 kb on + strand, within LRK53_RS03265 at 768.265 kb on + strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.266 kb on - strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.268 kb on + strand, within LRK53_RS03265 at 768.269 kb on - strand, within LRK53_RS03265 at 768.269 kb on - strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.343 kb on + strand, within LRK53_RS03265 at 768.344 kb on - strand, within LRK53_RS03265 at 768.344 kb on - strand, within LRK53_RS03265 at 768.403 kb on + strand, within LRK53_RS03265 at 768.403 kb on + strand, within LRK53_RS03265 at 768.404 kb on - strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.440 kb on + strand, within LRK53_RS03265 at 768.441 kb on - strand, within LRK53_RS03265 at 768.472 kb on + strand, within LRK53_RS03265 at 768.472 kb on + strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.473 kb on - strand, within LRK53_RS03265 at 768.577 kb on + strand, within LRK53_RS03265 at 768.592 kb on + strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.593 kb on - strand, within LRK53_RS03265 at 768.665 kb on + strand, within LRK53_RS03265 at 768.665 kb on + strand, within LRK53_RS03265 at 768.665 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.667 kb on + strand, within LRK53_RS03265 at 768.668 kb on - strand, within LRK53_RS03265 at 768.668 kb on - strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.724 kb on + strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.725 kb on - strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.898 kb on + strand, within LRK53_RS03265 at 768.899 kb on - strand, within LRK53_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 766,331 + LRK53_RS03255 0.63 +1.1 766,388 + LRK53_RS03255 0.66 +0.6 766,388 + LRK53_RS03255 0.66 -0.1 766,388 + LRK53_RS03255 0.66 -0.2 766,389 - LRK53_RS03255 0.66 +0.7 766,389 - LRK53_RS03255 0.66 -1.3 766,424 + LRK53_RS03255 0.67 -0.4 766,589 + LRK53_RS03255 0.74 -0.8 766,589 + LRK53_RS03255 0.74 -0.3 766,590 - LRK53_RS03255 0.74 -0.8 766,664 + LRK53_RS03255 0.78 +0.1 766,742 + LRK53_RS03255 0.81 +1.0 766,742 + LRK53_RS03255 0.81 -0.6 766,743 - LRK53_RS03255 0.81 +1.1 766,758 - LRK53_RS03255 0.82 -1.0 766,773 - LRK53_RS03255 0.82 -0.4 766,785 - LRK53_RS03255 0.83 -1.9 766,785 - LRK53_RS03255 0.83 +1.1 766,907 + LRK53_RS03255 0.88 -1.0 766,907 + LRK53_RS03255 0.88 +0.4 766,908 - LRK53_RS03255 0.88 -0.4 766,922 + LRK53_RS03255 0.89 -0.6 766,922 + LRK53_RS03255 0.89 -0.9 766,922 + LRK53_RS03255 0.89 +0.8 766,923 - LRK53_RS03255 0.89 +1.1 766,925 + LRK53_RS03255 0.89 -0.4 766,925 + LRK53_RS03255 0.89 +0.6 766,925 + LRK53_RS03255 0.89 +1.1 766,925 + LRK53_RS03255 0.89 -0.3 766,925 + LRK53_RS03255 0.89 -0.4 766,925 + LRK53_RS03255 0.89 -0.7 766,925 + LRK53_RS03255 0.89 -2.0 766,925 + LRK53_RS03255 0.89 -0.2 766,925 + LRK53_RS03255 0.89 +0.1 766,925 + LRK53_RS03255 0.89 -1.4 766,925 + LRK53_RS03255 0.89 +0.6 766,925 + LRK53_RS03255 0.89 -1.4 766,926 - LRK53_RS03255 0.89 -0.1 766,926 - LRK53_RS03255 0.89 +0.4 766,926 - LRK53_RS03255 0.89 -0.9 766,926 - LRK53_RS03255 0.89 -0.9 766,926 - LRK53_RS03255 0.89 -0.3 766,926 - LRK53_RS03255 0.89 +0.4 766,926 - LRK53_RS03255 0.89 +0.1 766,926 - LRK53_RS03255 0.89 +0.6 766,926 - LRK53_RS03255 0.89 +0.6 766,926 - LRK53_RS03255 0.89 -0.9 766,926 - LRK53_RS03255 0.89 -1.3 766,926 - LRK53_RS03255 0.89 +0.1 766,931 + LRK53_RS03255 0.89 -0.7 766,931 + LRK53_RS03255 0.89 +0.1 766,931 + LRK53_RS03255 0.89 +1.1 766,931 + LRK53_RS03255 0.89 +1.1 766,931 + LRK53_RS03255 0.89 +1.7 766,931 + LRK53_RS03255 0.89 -3.1 766,931 + LRK53_RS03255 0.89 +0.1 766,931 + LRK53_RS03255 0.89 -1.2 766,932 - LRK53_RS03255 0.89 +0.1 766,932 - LRK53_RS03255 0.89 -1.2 766,932 - LRK53_RS03255 0.89 -0.3 766,932 - LRK53_RS03255 0.89 +0.8 766,932 - LRK53_RS03255 0.89 +0.3 766,932 - LRK53_RS03255 0.89 +0.1 766,932 - LRK53_RS03255 0.89 +0.0 766,932 - LRK53_RS03255 0.89 -1.0 766,932 - LRK53_RS03255 0.89 -0.9 766,932 - LRK53_RS03255 0.89 -1.8 766,932 - LRK53_RS03255 0.89 -0.2 766,932 - LRK53_RS03255 0.89 -2.0 766,932 - LRK53_RS03255 0.89 +0.1 766,932 - LRK53_RS03255 0.89 -1.6 766,951 - -1.2 766,958 + -0.8 766,959 - -0.5 766,959 - +2.7 767,060 + -0.6 767,061 - +2.1 767,061 - -0.2 767,061 - -2.6 767,061 - -0.7 767,061 - +0.2 767,063 + -1.4 767,063 + +0.1 767,064 - +0.7 767,064 - -1.3 767,114 + -0.4 767,114 + -0.9 767,114 + -0.2 767,115 - -0.3 767,304 + +1.1 767,305 - -2.1 767,493 + LRK53_RS03260 0.32 -0.8 767,493 + LRK53_RS03260 0.32 +1.1 767,494 - LRK53_RS03260 0.32 +0.4 767,529 + LRK53_RS03260 0.37 -0.7 767,529 + LRK53_RS03260 0.37 +0.1 767,529 + LRK53_RS03260 0.37 -0.7 767,529 + LRK53_RS03260 0.37 +0.0 767,529 + LRK53_RS03260 0.37 -0.4 767,529 + LRK53_RS03260 0.37 -1.3 767,529 + LRK53_RS03260 0.37 -0.2 767,529 + LRK53_RS03260 0.37 -0.2 767,529 + LRK53_RS03260 0.37 +1.4 767,530 - LRK53_RS03260 0.37 -0.2 767,530 - LRK53_RS03260 0.37 -0.0 767,530 - LRK53_RS03260 0.37 +0.8 767,530 - LRK53_RS03260 0.37 +1.7 767,530 - LRK53_RS03260 0.37 +0.1 767,530 - LRK53_RS03260 0.37 -2.3 767,530 - LRK53_RS03260 0.37 -0.4 767,736 - LRK53_RS03260 0.65 -0.1 767,794 + LRK53_RS03260 0.73 -0.3 767,794 + LRK53_RS03260 0.73 +0.3 767,794 + LRK53_RS03260 0.73 +0.7 767,794 + LRK53_RS03260 0.73 +0.1 767,795 - LRK53_RS03260 0.73 +0.1 767,795 - LRK53_RS03260 0.73 +0.4 767,841 + LRK53_RS03260 0.80 +0.1 767,841 + LRK53_RS03260 0.80 -0.0 767,841 + LRK53_RS03260 0.80 +0.6 767,841 + LRK53_RS03260 0.80 -2.4 767,842 - LRK53_RS03260 0.80 -1.9 767,842 - LRK53_RS03260 0.80 -0.1 767,918 + -1.4 767,918 + -0.2 767,918 + +1.1 767,919 - +0.1 767,919 - +0.8 767,919 - +1.1 767,919 - +0.3 767,921 + -0.6 767,921 + -1.3 767,921 + +0.8 767,921 + -2.2 767,922 - -1.4 768,082 + +1.1 768,082 + -0.3 768,172 + LRK53_RS03265 0.15 +0.8 768,172 + LRK53_RS03265 0.15 -0.1 768,173 - LRK53_RS03265 0.15 -1.6 768,173 - LRK53_RS03265 0.15 -1.2 768,173 - LRK53_RS03265 0.15 -0.8 768,173 - LRK53_RS03265 0.15 -1.2 768,173 - LRK53_RS03265 0.15 +1.1 768,253 + LRK53_RS03265 0.21 -1.7 768,253 + LRK53_RS03265 0.21 +1.1 768,254 - LRK53_RS03265 0.21 -0.6 768,254 - LRK53_RS03265 0.21 -0.2 768,254 - LRK53_RS03265 0.21 +0.1 768,265 + LRK53_RS03265 0.22 -0.1 768,265 + LRK53_RS03265 0.22 -1.3 768,265 + LRK53_RS03265 0.22 -0.7 768,266 - LRK53_RS03265 0.22 -1.2 768,266 - LRK53_RS03265 0.22 -0.3 768,266 - LRK53_RS03265 0.22 -0.4 768,266 - LRK53_RS03265 0.22 +0.9 768,266 - LRK53_RS03265 0.22 +0.4 768,268 + LRK53_RS03265 0.22 -0.2 768,268 + LRK53_RS03265 0.22 -0.9 768,268 + LRK53_RS03265 0.22 -1.2 768,268 + LRK53_RS03265 0.22 +0.1 768,269 - LRK53_RS03265 0.23 +0.1 768,269 - LRK53_RS03265 0.23 +0.1 768,343 + LRK53_RS03265 0.28 -0.6 768,343 + LRK53_RS03265 0.28 +0.7 768,343 + LRK53_RS03265 0.28 -1.7 768,343 + LRK53_RS03265 0.28 -1.4 768,343 + LRK53_RS03265 0.28 -1.2 768,344 - LRK53_RS03265 0.28 +0.4 768,344 - LRK53_RS03265 0.28 +0.4 768,403 + LRK53_RS03265 0.33 -0.1 768,403 + LRK53_RS03265 0.33 -0.5 768,404 - LRK53_RS03265 0.33 -1.3 768,440 + LRK53_RS03265 0.36 +2.0 768,440 + LRK53_RS03265 0.36 -0.3 768,440 + LRK53_RS03265 0.36 -0.3 768,440 + LRK53_RS03265 0.36 -0.9 768,441 - LRK53_RS03265 0.36 +0.6 768,472 + LRK53_RS03265 0.39 -0.2 768,472 + LRK53_RS03265 0.39 -1.7 768,473 - LRK53_RS03265 0.39 +0.1 768,473 - LRK53_RS03265 0.39 +0.8 768,473 - LRK53_RS03265 0.39 +0.1 768,473 - LRK53_RS03265 0.39 -0.7 768,577 + LRK53_RS03265 0.47 -1.7 768,592 + LRK53_RS03265 0.48 -0.9 768,593 - LRK53_RS03265 0.48 -0.7 768,593 - LRK53_RS03265 0.48 +0.4 768,593 - LRK53_RS03265 0.48 +0.4 768,593 - LRK53_RS03265 0.48 -1.2 768,665 + LRK53_RS03265 0.54 -1.1 768,665 + LRK53_RS03265 0.54 -1.4 768,665 + LRK53_RS03265 0.54 +0.1 768,667 + LRK53_RS03265 0.54 +0.1 768,667 + LRK53_RS03265 0.54 -0.2 768,667 + LRK53_RS03265 0.54 +0.1 768,667 + LRK53_RS03265 0.54 +0.9 768,668 - LRK53_RS03265 0.54 -1.2 768,668 - LRK53_RS03265 0.54 +0.1 768,724 + LRK53_RS03265 0.58 -0.3 768,724 + LRK53_RS03265 0.58 -0.7 768,724 + LRK53_RS03265 0.58 -1.1 768,724 + LRK53_RS03265 0.58 -1.9 768,724 + LRK53_RS03265 0.58 +0.3 768,725 - LRK53_RS03265 0.58 +2.7 768,725 - LRK53_RS03265 0.58 +3.5 768,725 - LRK53_RS03265 0.58 -0.6 768,725 - LRK53_RS03265 0.58 +0.1 768,725 - LRK53_RS03265 0.58 +1.6 768,898 + LRK53_RS03265 0.72 -1.6 768,898 + LRK53_RS03265 0.72 +0.4 768,898 + LRK53_RS03265 0.72 +1.1 768,898 + LRK53_RS03265 0.72 -0.4 768,898 + LRK53_RS03265 0.72 +0.1 768,899 - LRK53_RS03265 0.72 -0.1
Or see this region's nucleotide sequence