Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03145 and LRK53_RS03150 are separated by 21 nucleotides LRK53_RS03150 and LRK53_RS03155 overlap by 4 nucleotides LRK53_RS03155 and LRK53_RS03160 are separated by 164 nucleotides
LRK53_RS03145: LRK53_RS03145 - IS1595 family transposase, at 735,056 to 735,997
_RS03145
LRK53_RS03150: LRK53_RS03150 - IS4 family transposase, at 736,019 to 736,930
_RS03150
LRK53_RS03155: LRK53_RS03155 - threonine synthase, at 736,927 to 738,234
_RS03155
LRK53_RS03160: LRK53_RS03160 - homoserine kinase, at 738,399 to 739,397
_RS03160
Position (kb) 736
737
738
739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 735.995 kb on + strand at 736.125 kb on + strand, within LRK53_RS03150 at 736.140 kb on + strand, within LRK53_RS03150 at 736.140 kb on + strand, within LRK53_RS03150 at 736.141 kb on - strand, within LRK53_RS03150 at 736.426 kb on + strand, within LRK53_RS03150 at 736.426 kb on + strand, within LRK53_RS03150 at 736.494 kb on + strand, within LRK53_RS03150 at 736.494 kb on + strand, within LRK53_RS03150 at 736.494 kb on + strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.495 kb on - strand, within LRK53_RS03150 at 736.522 kb on + strand, within LRK53_RS03150 at 736.522 kb on + strand, within LRK53_RS03150 at 736.522 kb on + strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.523 kb on - strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.556 kb on + strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.557 kb on - strand, within LRK53_RS03150 at 736.558 kb on + strand, within LRK53_RS03150 at 736.558 kb on + strand, within LRK53_RS03150 at 736.558 kb on + strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.559 kb on - strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.577 kb on + strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.578 kb on - strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.637 kb on + strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.638 kb on - strand, within LRK53_RS03150 at 736.640 kb on + strand, within LRK53_RS03150 at 736.640 kb on + strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.641 kb on - strand, within LRK53_RS03150 at 736.656 kb on + strand, within LRK53_RS03150 at 736.657 kb on - strand, within LRK53_RS03150 at 736.657 kb on - strand, within LRK53_RS03150 at 736.722 kb on - strand, within LRK53_RS03150 at 736.722 kb on - strand, within LRK53_RS03150 at 736.857 kb on - strand at 736.857 kb on - strand at 736.857 kb on - strand at 736.914 kb on - strand at 736.914 kb on - strand at 737.410 kb on + strand, within LRK53_RS03155 at 737.411 kb on - strand, within LRK53_RS03155 at 737.541 kb on - strand, within LRK53_RS03155 at 737.541 kb on - strand, within LRK53_RS03155 at 737.543 kb on + strand, within LRK53_RS03155 at 737.543 kb on + strand, within LRK53_RS03155 at 737.543 kb on + strand, within LRK53_RS03155 at 737.543 kb on + strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 737.544 kb on - strand, within LRK53_RS03155 at 738.134 kb on + strand at 738.134 kb on + strand at 738.134 kb on + strand at 738.134 kb on + strand at 738.134 kb on + strand at 738.134 kb on + strand at 738.135 kb on - strand at 738.135 kb on - strand at 738.135 kb on - strand at 738.135 kb on - strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.234 kb on + strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.235 kb on - strand at 738.315 kb on + strand at 738.315 kb on + strand at 738.370 kb on + strand at 738.371 kb on - strand at 738.391 kb on + strand at 738.547 kb on + strand, within LRK53_RS03160 at 738.548 kb on - strand, within LRK53_RS03160 at 738.548 kb on - strand, within LRK53_RS03160 at 738.976 kb on + strand, within LRK53_RS03160 at 738.976 kb on + strand, within LRK53_RS03160 at 738.976 kb on + strand, within LRK53_RS03160 at 738.977 kb on - strand, within LRK53_RS03160
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 735,995 + -0.8 735,995 + +1.7 735,995 + -0.3 735,995 + -1.5 735,995 + +1.1 735,995 + +1.3 736,125 + LRK53_RS03150 0.12 -0.7 736,140 + LRK53_RS03150 0.13 +0.9 736,140 + LRK53_RS03150 0.13 -0.3 736,141 - LRK53_RS03150 0.13 -0.0 736,426 + LRK53_RS03150 0.45 +0.2 736,426 + LRK53_RS03150 0.45 -0.7 736,494 + LRK53_RS03150 0.52 +1.5 736,494 + LRK53_RS03150 0.52 +0.7 736,494 + LRK53_RS03150 0.52 -0.7 736,495 - LRK53_RS03150 0.52 +2.3 736,495 - LRK53_RS03150 0.52 +0.1 736,495 - LRK53_RS03150 0.52 -1.3 736,495 - LRK53_RS03150 0.52 -1.1 736,495 - LRK53_RS03150 0.52 -0.7 736,495 - LRK53_RS03150 0.52 +0.7 736,495 - LRK53_RS03150 0.52 -0.2 736,495 - LRK53_RS03150 0.52 -0.9 736,495 - LRK53_RS03150 0.52 +0.5 736,495 - LRK53_RS03150 0.52 -1.5 736,522 + LRK53_RS03150 0.55 -0.1 736,522 + LRK53_RS03150 0.55 -0.4 736,522 + LRK53_RS03150 0.55 +1.1 736,523 - LRK53_RS03150 0.55 -0.4 736,523 - LRK53_RS03150 0.55 -0.2 736,523 - LRK53_RS03150 0.55 -0.3 736,523 - LRK53_RS03150 0.55 -0.3 736,523 - LRK53_RS03150 0.55 -0.4 736,523 - LRK53_RS03150 0.55 -0.4 736,556 + LRK53_RS03150 0.59 +0.8 736,556 + LRK53_RS03150 0.59 -0.2 736,556 + LRK53_RS03150 0.59 +0.7 736,556 + LRK53_RS03150 0.59 -1.3 736,556 + LRK53_RS03150 0.59 -0.2 736,556 + LRK53_RS03150 0.59 +3.1 736,556 + LRK53_RS03150 0.59 -0.3 736,557 - LRK53_RS03150 0.59 -0.7 736,557 - LRK53_RS03150 0.59 -0.9 736,557 - LRK53_RS03150 0.59 -1.9 736,557 - LRK53_RS03150 0.59 +0.5 736,557 - LRK53_RS03150 0.59 -0.5 736,557 - LRK53_RS03150 0.59 -1.0 736,557 - LRK53_RS03150 0.59 -0.7 736,557 - LRK53_RS03150 0.59 +0.5 736,558 + LRK53_RS03150 0.59 -0.9 736,558 + LRK53_RS03150 0.59 -0.3 736,558 + LRK53_RS03150 0.59 +1.6 736,559 - LRK53_RS03150 0.59 -1.2 736,559 - LRK53_RS03150 0.59 -0.1 736,559 - LRK53_RS03150 0.59 -2.3 736,559 - LRK53_RS03150 0.59 -1.7 736,559 - LRK53_RS03150 0.59 -0.0 736,559 - LRK53_RS03150 0.59 +0.2 736,559 - LRK53_RS03150 0.59 +0.4 736,577 + LRK53_RS03150 0.61 -0.3 736,577 + LRK53_RS03150 0.61 -0.5 736,577 + LRK53_RS03150 0.61 +0.4 736,577 + LRK53_RS03150 0.61 -1.3 736,577 + LRK53_RS03150 0.61 +1.6 736,577 + LRK53_RS03150 0.61 -1.7 736,577 + LRK53_RS03150 0.61 -0.4 736,577 + LRK53_RS03150 0.61 -0.3 736,577 + LRK53_RS03150 0.61 -2.8 736,577 + LRK53_RS03150 0.61 -0.7 736,578 - LRK53_RS03150 0.61 -0.8 736,578 - LRK53_RS03150 0.61 -0.3 736,578 - LRK53_RS03150 0.61 +1.3 736,578 - LRK53_RS03150 0.61 +0.4 736,578 - LRK53_RS03150 0.61 -0.8 736,578 - LRK53_RS03150 0.61 -0.7 736,578 - LRK53_RS03150 0.61 +0.6 736,578 - LRK53_RS03150 0.61 +0.3 736,578 - LRK53_RS03150 0.61 +0.3 736,578 - LRK53_RS03150 0.61 -0.1 736,578 - LRK53_RS03150 0.61 +0.1 736,578 - LRK53_RS03150 0.61 +0.6 736,578 - LRK53_RS03150 0.61 +2.3 736,578 - LRK53_RS03150 0.61 -0.3 736,637 + LRK53_RS03150 0.68 -0.4 736,637 + LRK53_RS03150 0.68 +0.2 736,637 + LRK53_RS03150 0.68 -2.3 736,637 + LRK53_RS03150 0.68 -1.7 736,637 + LRK53_RS03150 0.68 -0.2 736,638 - LRK53_RS03150 0.68 -0.3 736,638 - LRK53_RS03150 0.68 -0.3 736,638 - LRK53_RS03150 0.68 -1.0 736,638 - LRK53_RS03150 0.68 -0.3 736,640 + LRK53_RS03150 0.68 +0.6 736,640 + LRK53_RS03150 0.68 -1.5 736,641 - LRK53_RS03150 0.68 -0.3 736,641 - LRK53_RS03150 0.68 -1.5 736,641 - LRK53_RS03150 0.68 +1.3 736,641 - LRK53_RS03150 0.68 +1.6 736,641 - LRK53_RS03150 0.68 +1.0 736,656 + LRK53_RS03150 0.70 -0.5 736,657 - LRK53_RS03150 0.70 -0.9 736,657 - LRK53_RS03150 0.70 +1.3 736,722 - LRK53_RS03150 0.77 -1.2 736,722 - LRK53_RS03150 0.77 -1.3 736,857 - -1.7 736,857 - -2.3 736,857 - -0.2 736,914 - -2.5 736,914 - +0.3 737,410 + LRK53_RS03155 0.37 -2.3 737,411 - LRK53_RS03155 0.37 -0.7 737,541 - LRK53_RS03155 0.47 -2.0 737,541 - LRK53_RS03155 0.47 -2.4 737,543 + LRK53_RS03155 0.47 +0.3 737,543 + LRK53_RS03155 0.47 -1.3 737,543 + LRK53_RS03155 0.47 +1.3 737,543 + LRK53_RS03155 0.47 -2.1 737,544 - LRK53_RS03155 0.47 -1.0 737,544 - LRK53_RS03155 0.47 -1.0 737,544 - LRK53_RS03155 0.47 -2.0 737,544 - LRK53_RS03155 0.47 -0.5 737,544 - LRK53_RS03155 0.47 +0.3 737,544 - LRK53_RS03155 0.47 -0.8 737,544 - LRK53_RS03155 0.47 -1.5 737,544 - LRK53_RS03155 0.47 -1.3 737,544 - LRK53_RS03155 0.47 -1.5 738,134 + -1.0 738,134 + -1.4 738,134 + -2.3 738,134 + -2.0 738,134 + -1.5 738,134 + -1.5 738,135 - +1.0 738,135 - -2.3 738,135 - -1.3 738,135 - -2.0 738,234 + -0.1 738,234 + -0.7 738,234 + +0.9 738,234 + +0.1 738,234 + -2.3 738,234 + +0.3 738,234 + +1.3 738,234 + -1.0 738,234 + -1.3 738,234 + +0.0 738,234 + -1.3 738,234 + -1.3 738,235 - -1.2 738,235 - +1.3 738,235 - -0.3 738,235 - -3.0 738,235 - -0.3 738,235 - -0.9 738,235 - -1.8 738,235 - +1.3 738,235 - +1.3 738,235 - -1.9 738,235 - +0.9 738,235 - +1.3 738,235 - +1.1 738,235 - -1.9 738,235 - +0.1 738,315 + +0.6 738,315 + -1.0 738,370 + -0.5 738,371 - -0.0 738,391 + +1.3 738,547 + LRK53_RS03160 0.15 -0.3 738,548 - LRK53_RS03160 0.15 -0.7 738,548 - LRK53_RS03160 0.15 -2.6 738,976 + LRK53_RS03160 0.58 -3.1 738,976 + LRK53_RS03160 0.58 -1.7 738,976 + LRK53_RS03160 0.58 -1.0 738,977 - LRK53_RS03160 0.58 -0.0
Or see this region's nucleotide sequence