Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03095

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03090 and LRK53_RS03095 are separated by 91 nucleotidesLRK53_RS03095 and LRK53_RS03100 are separated by 261 nucleotides LRK53_RS03090: LRK53_RS03090 - ketol-acid reductoisomerase, at 721,179 to 722,192 _RS03090 LRK53_RS03095: LRK53_RS03095 - dihydroxy-acid dehydratase, at 722,284 to 724,005 _RS03095 LRK53_RS03100: LRK53_RS03100 - 3-isopropylmalate dehydrogenase, at 724,267 to 725,364 _RS03100 Position (kb) 722 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 721.306 kb on + strand, within LRK53_RS03090at 721.306 kb on + strand, within LRK53_RS03090at 721.306 kb on + strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.432 kb on + strand, within LRK53_RS03090at 721.432 kb on + strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.441 kb on + strand, within LRK53_RS03090at 721.441 kb on + strand, within LRK53_RS03090at 721.492 kb on + strand, within LRK53_RS03090at 721.493 kb on - strand, within LRK53_RS03090at 721.493 kb on - strand, within LRK53_RS03090at 721.493 kb on - strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.538 kb on - strand, within LRK53_RS03090at 721.538 kb on - strand, within LRK53_RS03090at 721.790 kb on - strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.944 kb on + strand, within LRK53_RS03090at 721.945 kb on - strand, within LRK53_RS03090at 721.945 kb on - strand, within LRK53_RS03090at 722.137 kb on + strandat 722.404 kb on + strandat 722.404 kb on + strandat 722.404 kb on + strandat 722.405 kb on - strandat 722.876 kb on + strand, within LRK53_RS03095at 722.877 kb on - strand, within LRK53_RS03095at 722.877 kb on - strand, within LRK53_RS03095at 722.889 kb on - strand, within LRK53_RS03095at 723.080 kb on + strand, within LRK53_RS03095at 723.584 kb on + strand, within LRK53_RS03095at 723.741 kb on - strand, within LRK53_RS03095at 723.920 kb on - strandat 724.111 kb on + strandat 724.111 kb on + strandat 724.111 kb on + strandat 724.111 kb on + strandat 724.112 kb on - strandat 724.554 kb on - strand, within LRK53_RS03100at 724.674 kb on - strand, within LRK53_RS03100at 724.780 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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721,306 + LRK53_RS03090 0.13 -3.0
721,306 + LRK53_RS03090 0.13 -1.2
721,306 + LRK53_RS03090 0.13 -2.0
721,307 - LRK53_RS03090 0.13 -1.3
721,307 - LRK53_RS03090 0.13 -1.3
721,307 - LRK53_RS03090 0.13 -1.7
721,307 - LRK53_RS03090 0.13 +1.3
721,377 + LRK53_RS03090 0.20 -0.7
721,377 + LRK53_RS03090 0.20 +1.3
721,377 + LRK53_RS03090 0.20 -2.6
721,377 + LRK53_RS03090 0.20 +1.3
721,377 + LRK53_RS03090 0.20 -1.7
721,377 + LRK53_RS03090 0.20 -0.0
721,377 + LRK53_RS03090 0.20 -1.9
721,378 - LRK53_RS03090 0.20 -2.2
721,378 - LRK53_RS03090 0.20 -3.4
721,378 - LRK53_RS03090 0.20 -1.9
721,378 - LRK53_RS03090 0.20 -1.7
721,432 + LRK53_RS03090 0.25 +2.3
721,432 + LRK53_RS03090 0.25 -2.0
721,433 - LRK53_RS03090 0.25 -2.0
721,433 - LRK53_RS03090 0.25 -2.0
721,433 - LRK53_RS03090 0.25 -0.7
721,433 - LRK53_RS03090 0.25 -2.0
721,441 + LRK53_RS03090 0.26 +1.3
721,441 + LRK53_RS03090 0.26 -1.3
721,492 + LRK53_RS03090 0.31 +0.1
721,493 - LRK53_RS03090 0.31 +1.9
721,493 - LRK53_RS03090 0.31 +1.3
721,493 - LRK53_RS03090 0.31 -1.7
721,534 + LRK53_RS03090 0.35 -1.0
721,534 + LRK53_RS03090 0.35 -1.3
721,534 + LRK53_RS03090 0.35 +0.5
721,534 + LRK53_RS03090 0.35 -0.7
721,534 + LRK53_RS03090 0.35 -1.0
721,535 - LRK53_RS03090 0.35 -2.2
721,535 - LRK53_RS03090 0.35 -2.3
721,535 - LRK53_RS03090 0.35 -1.5
721,535 - LRK53_RS03090 0.35 +1.3
721,535 - LRK53_RS03090 0.35 -1.3
721,535 - LRK53_RS03090 0.35 -0.7
721,535 - LRK53_RS03090 0.35 -1.9
721,538 - LRK53_RS03090 0.35 -0.3
721,538 - LRK53_RS03090 0.35 -2.1
721,790 - LRK53_RS03090 0.60 -2.3
721,942 + LRK53_RS03090 0.75 +0.7
721,942 + LRK53_RS03090 0.75 -1.9
721,942 + LRK53_RS03090 0.75 +0.3
721,942 + LRK53_RS03090 0.75 -1.7
721,942 + LRK53_RS03090 0.75 -1.4
721,942 + LRK53_RS03090 0.75 +0.3
721,942 + LRK53_RS03090 0.75 +0.3
721,942 + LRK53_RS03090 0.75 -1.5
721,942 + LRK53_RS03090 0.75 -0.6
721,942 + LRK53_RS03090 0.75 -3.6
721,942 + LRK53_RS03090 0.75 -1.3
721,942 + LRK53_RS03090 0.75 -0.8
721,942 + LRK53_RS03090 0.75 -0.0
721,942 + LRK53_RS03090 0.75 -1.0
721,942 + LRK53_RS03090 0.75 -1.9
721,943 - LRK53_RS03090 0.75 -1.2
721,943 - LRK53_RS03090 0.75 -1.0
721,943 - LRK53_RS03090 0.75 -0.7
721,943 - LRK53_RS03090 0.75 -0.9
721,943 - LRK53_RS03090 0.75 -1.5
721,943 - LRK53_RS03090 0.75 -1.8
721,943 - LRK53_RS03090 0.75 -1.3
721,943 - LRK53_RS03090 0.75 -0.7
721,943 - LRK53_RS03090 0.75 -0.7
721,944 + LRK53_RS03090 0.75 -2.3
721,945 - LRK53_RS03090 0.76 -0.6
721,945 - LRK53_RS03090 0.76 +0.3
722,137 + +0.3
722,404 + -0.3
722,404 + -1.6
722,404 + -0.7
722,405 - -0.3
722,876 + LRK53_RS03095 0.34 -2.8
722,877 - LRK53_RS03095 0.34 -0.3
722,877 - LRK53_RS03095 0.34 -0.5
722,889 - LRK53_RS03095 0.35 -1.0
723,080 + LRK53_RS03095 0.46 -0.7
723,584 + LRK53_RS03095 0.75 -1.5
723,741 - LRK53_RS03095 0.85 -2.7
723,920 - +1.3
724,111 + +0.1
724,111 + -1.0
724,111 + -1.0
724,111 + -0.1
724,112 - +0.3
724,554 - LRK53_RS03100 0.26 -2.0
724,674 - LRK53_RS03100 0.37 -0.0
724,780 + LRK53_RS03100 0.47 +0.1
724,892 + LRK53_RS03100 0.57 -1.9
724,892 + LRK53_RS03100 0.57 -1.5
724,892 + LRK53_RS03100 0.57 +1.0
724,892 + LRK53_RS03100 0.57 -3.1
724,892 + LRK53_RS03100 0.57 -0.5
724,893 - LRK53_RS03100 0.57 -2.5
724,893 - LRK53_RS03100 0.57 -1.7
724,893 - LRK53_RS03100 0.57 -1.3
724,893 - LRK53_RS03100 0.57 -0.0
724,893 - LRK53_RS03100 0.57 -0.7
724,893 - LRK53_RS03100 0.57 -1.0
724,893 - LRK53_RS03100 0.57 -1.2
724,893 - LRK53_RS03100 0.57 +1.3
724,943 + LRK53_RS03100 0.62 +0.1
724,943 + LRK53_RS03100 0.62 -0.6
724,943 + LRK53_RS03100 0.62 -1.5
724,943 + LRK53_RS03100 0.62 -2.3
724,943 + LRK53_RS03100 0.62 -1.9
724,943 + LRK53_RS03100 0.62 -2.0
724,943 + LRK53_RS03100 0.62 -0.0
724,943 + LRK53_RS03100 0.62 -3.4
724,944 - LRK53_RS03100 0.62 -0.7
724,944 - LRK53_RS03100 0.62 -1.5
724,944 - LRK53_RS03100 0.62 +1.3
724,944 - LRK53_RS03100 0.62 -1.3
724,944 - LRK53_RS03100 0.62 -3.2
724,944 - LRK53_RS03100 0.62 -1.3
724,944 - LRK53_RS03100 0.62 -0.0
724,975 + LRK53_RS03100 0.64 -1.9
724,975 + LRK53_RS03100 0.64 -0.1
724,975 + LRK53_RS03100 0.64 -0.5
724,975 + LRK53_RS03100 0.64 -1.7
724,975 + LRK53_RS03100 0.64 +1.0
724,975 + LRK53_RS03100 0.64 +1.3
724,975 + LRK53_RS03100 0.64 -2.4
724,975 + LRK53_RS03100 0.64 -0.3
724,975 + LRK53_RS03100 0.64 -0.3
724,975 + LRK53_RS03100 0.64 -0.7
724,975 + LRK53_RS03100 0.64 -1.7
724,975 + LRK53_RS03100 0.64 -1.5
724,975 + LRK53_RS03100 0.64 -2.4
724,976 - LRK53_RS03100 0.65 -1.0
724,976 - LRK53_RS03100 0.65 -1.5
724,976 - LRK53_RS03100 0.65 +0.7
724,976 - LRK53_RS03100 0.65 -1.2
724,976 - LRK53_RS03100 0.65 -1.7
724,976 - LRK53_RS03100 0.65 -1.1
724,976 - LRK53_RS03100 0.65 +0.7
724,976 - LRK53_RS03100 0.65 -1.1
724,976 - LRK53_RS03100 0.65 -1.5
724,976 - LRK53_RS03100 0.65 +1.3
724,976 - LRK53_RS03100 0.65 +0.3
724,976 - LRK53_RS03100 0.65 -1.3
724,976 - LRK53_RS03100 0.65 +1.3

Or see this region's nucleotide sequence