Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03085 and LRK53_RS03090 are separated by 149 nucleotides LRK53_RS03090 and LRK53_RS03095 are separated by 91 nucleotides
LRK53_RS03085: LRK53_RS03085 - biosynthetic-type acetolactate synthase large subunit, at 719,173 to 721,029
_RS03085
LRK53_RS03090: LRK53_RS03090 - ketol-acid reductoisomerase, at 721,179 to 722,192
_RS03090
LRK53_RS03095: LRK53_RS03095 - dihydroxy-acid dehydratase, at 722,284 to 724,005
_RS03095
Position (kb) 721
722
723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 720.299 kb on + strand, within LRK53_RS03085 at 720.299 kb on + strand, within LRK53_RS03085 at 720.736 kb on + strand, within LRK53_RS03085 at 720.736 kb on + strand, within LRK53_RS03085 at 720.737 kb on - strand, within LRK53_RS03085 at 720.737 kb on - strand, within LRK53_RS03085 at 720.875 kb on + strand at 720.875 kb on + strand at 720.875 kb on + strand at 720.875 kb on + strand at 720.937 kb on + strand at 720.938 kb on - strand at 720.938 kb on - strand at 720.938 kb on - strand at 721.306 kb on + strand, within LRK53_RS03090 at 721.306 kb on + strand, within LRK53_RS03090 at 721.306 kb on + strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.432 kb on + strand, within LRK53_RS03090 at 721.432 kb on + strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.441 kb on + strand, within LRK53_RS03090 at 721.441 kb on + strand, within LRK53_RS03090 at 721.492 kb on + strand, within LRK53_RS03090 at 721.493 kb on - strand, within LRK53_RS03090 at 721.493 kb on - strand, within LRK53_RS03090 at 721.493 kb on - strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.538 kb on - strand, within LRK53_RS03090 at 721.538 kb on - strand, within LRK53_RS03090 at 721.790 kb on - strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.944 kb on + strand, within LRK53_RS03090 at 721.945 kb on - strand, within LRK53_RS03090 at 721.945 kb on - strand, within LRK53_RS03090 at 722.137 kb on + strand at 722.404 kb on + strand at 722.404 kb on + strand at 722.404 kb on + strand at 722.405 kb on - strand at 722.876 kb on + strand, within LRK53_RS03095 at 722.877 kb on - strand, within LRK53_RS03095 at 722.877 kb on - strand, within LRK53_RS03095 at 722.889 kb on - strand, within LRK53_RS03095 at 723.080 kb on + strand, within LRK53_RS03095
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 720,299 + LRK53_RS03085 0.61 +0.3 720,299 + LRK53_RS03085 0.61 +0.6 720,736 + LRK53_RS03085 0.84 +0.9 720,736 + LRK53_RS03085 0.84 +1.0 720,737 - LRK53_RS03085 0.84 -1.5 720,737 - LRK53_RS03085 0.84 -0.3 720,875 + -2.8 720,875 + -0.3 720,875 + -0.7 720,875 + -0.3 720,937 + -1.7 720,938 - -0.3 720,938 - +1.3 720,938 - -0.8 721,306 + LRK53_RS03090 0.13 -3.0 721,306 + LRK53_RS03090 0.13 -1.2 721,306 + LRK53_RS03090 0.13 -2.0 721,307 - LRK53_RS03090 0.13 -1.3 721,307 - LRK53_RS03090 0.13 -1.3 721,307 - LRK53_RS03090 0.13 -1.7 721,307 - LRK53_RS03090 0.13 +1.3 721,377 + LRK53_RS03090 0.20 -0.7 721,377 + LRK53_RS03090 0.20 +1.3 721,377 + LRK53_RS03090 0.20 -2.6 721,377 + LRK53_RS03090 0.20 +1.3 721,377 + LRK53_RS03090 0.20 -1.7 721,377 + LRK53_RS03090 0.20 -0.0 721,377 + LRK53_RS03090 0.20 -1.9 721,378 - LRK53_RS03090 0.20 -2.2 721,378 - LRK53_RS03090 0.20 -3.4 721,378 - LRK53_RS03090 0.20 -1.9 721,378 - LRK53_RS03090 0.20 -1.7 721,432 + LRK53_RS03090 0.25 +2.3 721,432 + LRK53_RS03090 0.25 -2.0 721,433 - LRK53_RS03090 0.25 -2.0 721,433 - LRK53_RS03090 0.25 -2.0 721,433 - LRK53_RS03090 0.25 -0.7 721,433 - LRK53_RS03090 0.25 -2.0 721,441 + LRK53_RS03090 0.26 +1.3 721,441 + LRK53_RS03090 0.26 -1.3 721,492 + LRK53_RS03090 0.31 +0.1 721,493 - LRK53_RS03090 0.31 +1.9 721,493 - LRK53_RS03090 0.31 +1.3 721,493 - LRK53_RS03090 0.31 -1.7 721,534 + LRK53_RS03090 0.35 -1.0 721,534 + LRK53_RS03090 0.35 -1.3 721,534 + LRK53_RS03090 0.35 +0.5 721,534 + LRK53_RS03090 0.35 -0.7 721,534 + LRK53_RS03090 0.35 -1.0 721,535 - LRK53_RS03090 0.35 -2.2 721,535 - LRK53_RS03090 0.35 -2.3 721,535 - LRK53_RS03090 0.35 -1.5 721,535 - LRK53_RS03090 0.35 +1.3 721,535 - LRK53_RS03090 0.35 -1.3 721,535 - LRK53_RS03090 0.35 -0.7 721,535 - LRK53_RS03090 0.35 -1.9 721,538 - LRK53_RS03090 0.35 -0.3 721,538 - LRK53_RS03090 0.35 -2.1 721,790 - LRK53_RS03090 0.60 -2.3 721,942 + LRK53_RS03090 0.75 +0.7 721,942 + LRK53_RS03090 0.75 -1.9 721,942 + LRK53_RS03090 0.75 +0.3 721,942 + LRK53_RS03090 0.75 -1.7 721,942 + LRK53_RS03090 0.75 -1.4 721,942 + LRK53_RS03090 0.75 +0.3 721,942 + LRK53_RS03090 0.75 +0.3 721,942 + LRK53_RS03090 0.75 -1.5 721,942 + LRK53_RS03090 0.75 -0.6 721,942 + LRK53_RS03090 0.75 -3.6 721,942 + LRK53_RS03090 0.75 -1.3 721,942 + LRK53_RS03090 0.75 -0.8 721,942 + LRK53_RS03090 0.75 -0.0 721,942 + LRK53_RS03090 0.75 -1.0 721,942 + LRK53_RS03090 0.75 -1.9 721,943 - LRK53_RS03090 0.75 -1.2 721,943 - LRK53_RS03090 0.75 -1.0 721,943 - LRK53_RS03090 0.75 -0.7 721,943 - LRK53_RS03090 0.75 -0.9 721,943 - LRK53_RS03090 0.75 -1.5 721,943 - LRK53_RS03090 0.75 -1.8 721,943 - LRK53_RS03090 0.75 -1.3 721,943 - LRK53_RS03090 0.75 -0.7 721,943 - LRK53_RS03090 0.75 -0.7 721,944 + LRK53_RS03090 0.75 -2.3 721,945 - LRK53_RS03090 0.76 -0.6 721,945 - LRK53_RS03090 0.76 +0.3 722,137 + +0.3 722,404 + -0.3 722,404 + -1.6 722,404 + -0.7 722,405 - -0.3 722,876 + LRK53_RS03095 0.34 -2.8 722,877 - LRK53_RS03095 0.34 -0.3 722,877 - LRK53_RS03095 0.34 -0.5 722,889 - LRK53_RS03095 0.35 -1.0 723,080 + LRK53_RS03095 0.46 -0.7
Or see this region's nucleotide sequence