Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03060 and LRK53_RS03065 are separated by 290 nucleotides LRK53_RS03065 and LRK53_RS03070 are separated by 244 nucleotides
LRK53_RS03060: LRK53_RS03060 - TonB-dependent receptor, at 711,869 to 714,382
_RS03060
LRK53_RS03065: LRK53_RS03065 - 4-hydroxybenzoate octaprenyltransferase, at 714,673 to 715,602
_RS03065
LRK53_RS03070: LRK53_RS03070 - GGDEF domain-containing protein, at 715,847 to 716,983
_RS03070
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 713.712 kb on + strand, within LRK53_RS03060 at 713.712 kb on + strand, within LRK53_RS03060 at 713.712 kb on + strand, within LRK53_RS03060 at 713.713 kb on - strand, within LRK53_RS03060 at 713.760 kb on + strand, within LRK53_RS03060 at 713.761 kb on - strand, within LRK53_RS03060 at 713.802 kb on + strand, within LRK53_RS03060 at 713.802 kb on + strand, within LRK53_RS03060 at 713.802 kb on + strand, within LRK53_RS03060 at 713.802 kb on + strand, within LRK53_RS03060 at 713.802 kb on + strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.803 kb on - strand, within LRK53_RS03060 at 713.877 kb on + strand, within LRK53_RS03060 at 713.877 kb on + strand, within LRK53_RS03060 at 713.877 kb on + strand, within LRK53_RS03060 at 713.878 kb on - strand, within LRK53_RS03060 at 713.878 kb on - strand, within LRK53_RS03060 at 713.961 kb on + strand, within LRK53_RS03060 at 713.962 kb on - strand, within LRK53_RS03060 at 713.962 kb on - strand, within LRK53_RS03060 at 714.174 kb on + strand at 714.175 kb on - strand at 714.175 kb on - strand at 714.175 kb on - strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.376 kb on + strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.377 kb on - strand at 714.556 kb on + strand at 715.509 kb on - strand, within LRK53_RS03065 at 715.711 kb on - strand at 715.711 kb on - strand at 715.746 kb on + strand at 716.147 kb on + strand, within LRK53_RS03070 at 716.148 kb on - strand, within LRK53_RS03070 at 716.366 kb on + strand, within LRK53_RS03070 at 716.366 kb on + strand, within LRK53_RS03070 at 716.366 kb on + strand, within LRK53_RS03070 at 716.367 kb on - strand, within LRK53_RS03070 at 716.367 kb on - strand, within LRK53_RS03070 at 716.375 kb on + strand, within LRK53_RS03070 at 716.375 kb on + strand, within LRK53_RS03070 at 716.375 kb on + strand, within LRK53_RS03070 at 716.375 kb on + strand, within LRK53_RS03070 at 716.375 kb on + strand, within LRK53_RS03070 at 716.375 kb on + strand, within LRK53_RS03070 at 716.376 kb on - strand, within LRK53_RS03070 at 716.376 kb on - strand, within LRK53_RS03070 at 716.376 kb on - strand, within LRK53_RS03070 at 716.376 kb on - strand, within LRK53_RS03070 at 716.423 kb on + strand, within LRK53_RS03070 at 716.423 kb on + strand, within LRK53_RS03070 at 716.423 kb on + strand, within LRK53_RS03070 at 716.424 kb on - strand, within LRK53_RS03070 at 716.424 kb on - strand, within LRK53_RS03070 at 716.587 kb on + strand, within LRK53_RS03070 at 716.587 kb on + strand, within LRK53_RS03070 at 716.587 kb on + strand, within LRK53_RS03070 at 716.587 kb on + strand, within LRK53_RS03070 at 716.588 kb on - strand, within LRK53_RS03070 at 716.591 kb on + strand, within LRK53_RS03070 at 716.591 kb on + strand, within LRK53_RS03070 at 716.591 kb on + strand, within LRK53_RS03070 at 716.591 kb on + strand, within LRK53_RS03070 at 716.591 kb on + strand, within LRK53_RS03070 at 716.591 kb on + strand, within LRK53_RS03070 at 716.592 kb on - strand, within LRK53_RS03070 at 716.592 kb on - strand, within LRK53_RS03070 at 716.592 kb on - strand, within LRK53_RS03070 at 716.592 kb on - strand, within LRK53_RS03070 at 716.592 kb on - strand, within LRK53_RS03070 at 716.592 kb on - strand, within LRK53_RS03070 at 716.592 kb on - strand, within LRK53_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 713,712 + LRK53_RS03060 0.73 +2.3 713,712 + LRK53_RS03060 0.73 -1.2 713,712 + LRK53_RS03060 0.73 -0.1 713,713 - LRK53_RS03060 0.73 -0.5 713,760 + LRK53_RS03060 0.75 -2.4 713,761 - LRK53_RS03060 0.75 -0.3 713,802 + LRK53_RS03060 0.77 +0.6 713,802 + LRK53_RS03060 0.77 +1.0 713,802 + LRK53_RS03060 0.77 -0.7 713,802 + LRK53_RS03060 0.77 -2.9 713,802 + LRK53_RS03060 0.77 -0.4 713,803 - LRK53_RS03060 0.77 +1.1 713,803 - LRK53_RS03060 0.77 +1.3 713,803 - LRK53_RS03060 0.77 -0.0 713,803 - LRK53_RS03060 0.77 +1.3 713,803 - LRK53_RS03060 0.77 +0.9 713,803 - LRK53_RS03060 0.77 -0.7 713,803 - LRK53_RS03060 0.77 +0.1 713,803 - LRK53_RS03060 0.77 -1.9 713,877 + LRK53_RS03060 0.80 +0.7 713,877 + LRK53_RS03060 0.80 -0.3 713,877 + LRK53_RS03060 0.80 -1.5 713,878 - LRK53_RS03060 0.80 +0.3 713,878 - LRK53_RS03060 0.80 -1.7 713,961 + LRK53_RS03060 0.83 -1.0 713,962 - LRK53_RS03060 0.83 +1.0 713,962 - LRK53_RS03060 0.83 -0.2 714,174 + +2.9 714,175 - +0.8 714,175 - +0.7 714,175 - +1.9 714,376 + +0.0 714,376 + -1.0 714,376 + +1.5 714,376 + +0.1 714,376 + +1.9 714,376 + +0.8 714,376 + +1.3 714,376 + -0.3 714,376 + -1.3 714,376 + -1.0 714,376 + +0.5 714,376 + -0.9 714,376 + -0.5 714,376 + -0.7 714,376 + -0.4 714,376 + -0.2 714,376 + +1.8 714,376 + -0.8 714,376 + +0.9 714,376 + -0.4 714,377 - -0.3 714,377 - +0.3 714,377 - +0.6 714,377 - +1.3 714,377 - -1.4 714,377 - +2.9 714,377 - +2.6 714,377 - +0.4 714,377 - -1.6 714,377 - +0.1 714,377 - -0.1 714,377 - -1.2 714,377 - -1.6 714,377 - -0.1 714,377 - +3.6 714,556 + +1.5 715,509 - LRK53_RS03065 0.90 -1.5 715,711 - +0.3 715,711 - +0.3 715,746 + +2.0 716,147 + LRK53_RS03070 0.26 -0.8 716,148 - LRK53_RS03070 0.26 +1.3 716,366 + LRK53_RS03070 0.46 -1.3 716,366 + LRK53_RS03070 0.46 +0.5 716,366 + LRK53_RS03070 0.46 -0.3 716,367 - LRK53_RS03070 0.46 -1.3 716,367 - LRK53_RS03070 0.46 +0.3 716,375 + LRK53_RS03070 0.46 +0.6 716,375 + LRK53_RS03070 0.46 +0.7 716,375 + LRK53_RS03070 0.46 -0.1 716,375 + LRK53_RS03070 0.46 +0.1 716,375 + LRK53_RS03070 0.46 -0.4 716,375 + LRK53_RS03070 0.46 -0.3 716,376 - LRK53_RS03070 0.47 -0.1 716,376 - LRK53_RS03070 0.47 -1.3 716,376 - LRK53_RS03070 0.47 +0.9 716,376 - LRK53_RS03070 0.47 +0.7 716,423 + LRK53_RS03070 0.51 -0.2 716,423 + LRK53_RS03070 0.51 +0.2 716,423 + LRK53_RS03070 0.51 -2.0 716,424 - LRK53_RS03070 0.51 +2.3 716,424 - LRK53_RS03070 0.51 +0.2 716,587 + LRK53_RS03070 0.65 +0.9 716,587 + LRK53_RS03070 0.65 -1.3 716,587 + LRK53_RS03070 0.65 +0.6 716,587 + LRK53_RS03070 0.65 -1.5 716,588 - LRK53_RS03070 0.65 -0.8 716,591 + LRK53_RS03070 0.65 +0.9 716,591 + LRK53_RS03070 0.65 -2.5 716,591 + LRK53_RS03070 0.65 +0.5 716,591 + LRK53_RS03070 0.65 +0.9 716,591 + LRK53_RS03070 0.65 +1.3 716,591 + LRK53_RS03070 0.65 +0.3 716,592 - LRK53_RS03070 0.66 -0.2 716,592 - LRK53_RS03070 0.66 -1.0 716,592 - LRK53_RS03070 0.66 +1.3 716,592 - LRK53_RS03070 0.66 +1.7 716,592 - LRK53_RS03070 0.66 +0.0 716,592 - LRK53_RS03070 0.66 -0.0 716,592 - LRK53_RS03070 0.66 +0.2
Or see this region's nucleotide sequence