Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01925

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01915 and LRK53_RS01920 are separated by 9 nucleotidesLRK53_RS01920 and LRK53_RS01925 are separated by 84 nucleotidesLRK53_RS01925 and LRK53_RS01930 are separated by 386 nucleotides LRK53_RS01915: LRK53_RS01915 - MFS transporter, at 447,605 to 449,479 _RS01915 LRK53_RS01920: LRK53_RS01920 - regulatory signaling modulator protein AmpE, at 449,489 to 450,358 _RS01920 LRK53_RS01925: LRK53_RS01925 - hypothetical protein, at 450,443 to 450,814 _RS01925 LRK53_RS01930: LRK53_RS01930 - NAD(+) diphosphatase, at 451,201 to 452,172 _RS01930 Position (kb) 450 451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 449.686 kb on - strand, within LRK53_RS01920at 449.710 kb on + strand, within LRK53_RS01920at 449.710 kb on + strand, within LRK53_RS01920at 449.711 kb on - strand, within LRK53_RS01920at 449.814 kb on + strand, within LRK53_RS01920at 449.815 kb on - strand, within LRK53_RS01920at 449.815 kb on - strand, within LRK53_RS01920at 449.815 kb on - strand, within LRK53_RS01920at 449.958 kb on + strand, within LRK53_RS01920at 449.958 kb on + strand, within LRK53_RS01920at 449.958 kb on + strand, within LRK53_RS01920at 449.958 kb on + strand, within LRK53_RS01920at 449.958 kb on + strand, within LRK53_RS01920at 449.959 kb on - strand, within LRK53_RS01920at 449.959 kb on - strand, within LRK53_RS01920at 449.959 kb on - strand, within LRK53_RS01920at 449.959 kb on - strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.108 kb on + strand, within LRK53_RS01920at 450.109 kb on - strand, within LRK53_RS01920at 450.109 kb on - strand, within LRK53_RS01920at 450.109 kb on - strand, within LRK53_RS01920at 450.109 kb on - strand, within LRK53_RS01920at 450.109 kb on - strand, within LRK53_RS01920at 450.109 kb on - strand, within LRK53_RS01920at 450.109 kb on - strand, within LRK53_RS01920at 450.242 kb on - strand, within LRK53_RS01920at 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.392 kb on + strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.393 kb on - strandat 450.600 kb on + strand, within LRK53_RS01925at 450.600 kb on + strand, within LRK53_RS01925at 450.600 kb on + strand, within LRK53_RS01925at 450.600 kb on + strand, within LRK53_RS01925at 450.600 kb on + strand, within LRK53_RS01925at 450.600 kb on + strand, within LRK53_RS01925at 450.600 kb on + strand, within LRK53_RS01925at 450.600 kb on + strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.601 kb on - strand, within LRK53_RS01925at 450.676 kb on + strand, within LRK53_RS01925at 450.677 kb on - strand, within LRK53_RS01925at 450.677 kb on - strand, within LRK53_RS01925at 450.974 kb on + strandat 451.109 kb on + strandat 451.109 kb on + strandat 451.277 kb on + strandat 451.277 kb on + strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.463 kb on + strand, within LRK53_RS01930at 451.463 kb on + strand, within LRK53_RS01930at 451.565 kb on + strand, within LRK53_RS01930at 451.566 kb on - strand, within LRK53_RS01930at 451.566 kb on - strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.782 kb on - strand, within LRK53_RS01930at 451.782 kb on - strand, within LRK53_RS01930

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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449,686 - LRK53_RS01920 0.23 +1.5
449,710 + LRK53_RS01920 0.25 -0.0
449,710 + LRK53_RS01920 0.25 -0.7
449,711 - LRK53_RS01920 0.26 +0.1
449,814 + LRK53_RS01920 0.37 -1.1
449,815 - LRK53_RS01920 0.37 +2.2
449,815 - LRK53_RS01920 0.37 -0.9
449,815 - LRK53_RS01920 0.37 -0.0
449,958 + LRK53_RS01920 0.54 -0.8
449,958 + LRK53_RS01920 0.54 -0.3
449,958 + LRK53_RS01920 0.54 -1.6
449,958 + LRK53_RS01920 0.54 -1.8
449,958 + LRK53_RS01920 0.54 +0.8
449,959 - LRK53_RS01920 0.54 +1.2
449,959 - LRK53_RS01920 0.54 -1.4
449,959 - LRK53_RS01920 0.54 -1.1
449,959 - LRK53_RS01920 0.54 +1.2
450,108 + LRK53_RS01920 0.71 -0.3
450,108 + LRK53_RS01920 0.71 +1.8
450,108 + LRK53_RS01920 0.71 -2.3
450,108 + LRK53_RS01920 0.71 -0.6
450,108 + LRK53_RS01920 0.71 -1.2
450,108 + LRK53_RS01920 0.71 -0.8
450,108 + LRK53_RS01920 0.71 +1.7
450,108 + LRK53_RS01920 0.71 +1.2
450,108 + LRK53_RS01920 0.71 +1.2
450,108 + LRK53_RS01920 0.71 -2.1
450,108 + LRK53_RS01920 0.71 +0.2
450,109 - LRK53_RS01920 0.71 +0.2
450,109 - LRK53_RS01920 0.71 -0.0
450,109 - LRK53_RS01920 0.71 -1.8
450,109 - LRK53_RS01920 0.71 -0.4
450,109 - LRK53_RS01920 0.71 -0.4
450,109 - LRK53_RS01920 0.71 -1.1
450,109 - LRK53_RS01920 0.71 +0.4
450,242 - LRK53_RS01920 0.87 -0.7
450,392 + -1.1
450,392 + -1.1
450,392 + -1.6
450,392 + -1.0
450,392 + +0.6
450,392 + -1.3
450,392 + -1.0
450,392 + -0.5
450,392 + -1.1
450,392 + -0.7
450,392 + -0.7
450,392 + -0.3
450,392 + +1.2
450,392 + +3.2
450,392 + -0.8
450,392 + +1.2
450,393 - +0.4
450,393 - -2.4
450,393 - -1.4
450,393 - -0.2
450,393 - -0.1
450,393 - -2.0
450,393 - -1.6
450,393 - -0.6
450,393 - +0.4
450,393 - -0.4
450,393 - -0.6
450,393 - -0.6
450,393 - -2.0
450,393 - -0.3
450,393 - -1.1
450,600 + LRK53_RS01925 0.42 -0.1
450,600 + LRK53_RS01925 0.42 -0.2
450,600 + LRK53_RS01925 0.42 +2.2
450,600 + LRK53_RS01925 0.42 +1.9
450,600 + LRK53_RS01925 0.42 -0.9
450,600 + LRK53_RS01925 0.42 -1.1
450,600 + LRK53_RS01925 0.42 -0.2
450,600 + LRK53_RS01925 0.42 +1.2
450,601 - LRK53_RS01925 0.42 +0.7
450,601 - LRK53_RS01925 0.42 -1.4
450,601 - LRK53_RS01925 0.42 +0.6
450,601 - LRK53_RS01925 0.42 +0.6
450,601 - LRK53_RS01925 0.42 -0.2
450,601 - LRK53_RS01925 0.42 +0.2
450,601 - LRK53_RS01925 0.42 +0.8
450,601 - LRK53_RS01925 0.42 +0.4
450,601 - LRK53_RS01925 0.42 -1.0
450,601 - LRK53_RS01925 0.42 +1.8
450,676 + LRK53_RS01925 0.63 -2.3
450,677 - LRK53_RS01925 0.63 +2.2
450,677 - LRK53_RS01925 0.63 -1.1
450,974 + -0.9
451,109 + -1.2
451,109 + +0.3
451,277 + +1.9
451,277 + -0.6
451,278 - -1.6
451,278 - -1.1
451,278 - -1.1
451,278 - +0.9
451,278 - +0.7
451,278 - -1.4
451,278 - +0.4
451,463 + LRK53_RS01930 0.27 -0.8
451,463 + LRK53_RS01930 0.27 +0.4
451,565 + LRK53_RS01930 0.37 -0.2
451,566 - LRK53_RS01930 0.38 -1.0
451,566 - LRK53_RS01930 0.38 +0.3
451,781 + LRK53_RS01930 0.60 +0.4
451,781 + LRK53_RS01930 0.60 -0.0
451,781 + LRK53_RS01930 0.60 -0.1
451,781 + LRK53_RS01930 0.60 -0.4
451,781 + LRK53_RS01930 0.60 -0.1
451,782 - LRK53_RS01930 0.60 -0.2
451,782 - LRK53_RS01930 0.60 -0.1

Or see this region's nucleotide sequence