Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01830

Experiment: NLDM_defined; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS01820 and LRK53_RS01825 are separated by 0 nucleotidesLRK53_RS01825 and LRK53_RS01830 are separated by 4 nucleotidesLRK53_RS01830 and LRK53_RS01835 are separated by 114 nucleotides LRK53_RS01820: LRK53_RS01820 - VOC family protein, at 426,280 to 426,699 _RS01820 LRK53_RS01825: LRK53_RS01825 - hypothetical protein, at 426,700 to 427,341 _RS01825 LRK53_RS01830: LRK53_RS01830 - hypothetical protein, at 427,346 to 428,002 _RS01830 LRK53_RS01835: LRK53_RS01835 - glutamate-1-semialdehyde 2,1-aminomutase, at 428,117 to 429,400 _RS01835 Position (kb) 427 428 429Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 426.475 kb on + strand, within LRK53_RS01820at 426.476 kb on - strand, within LRK53_RS01820at 426.476 kb on - strand, within LRK53_RS01820at 426.476 kb on - strand, within LRK53_RS01820at 426.476 kb on - strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.526 kb on + strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.527 kb on - strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.559 kb on + strand, within LRK53_RS01820at 426.560 kb on - strand, within LRK53_RS01820at 426.560 kb on - strand, within LRK53_RS01820at 426.560 kb on - strand, within LRK53_RS01820at 426.560 kb on - strand, within LRK53_RS01820at 426.560 kb on - strand, within LRK53_RS01820at 426.560 kb on - strand, within LRK53_RS01820at 426.697 kb on + strandat 426.697 kb on + strandat 426.751 kb on + strandat 426.751 kb on + strandat 426.774 kb on + strand, within LRK53_RS01825at 426.774 kb on + strand, within LRK53_RS01825at 426.774 kb on + strand, within LRK53_RS01825at 426.774 kb on + strand, within LRK53_RS01825at 426.774 kb on + strand, within LRK53_RS01825at 426.774 kb on + strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.775 kb on - strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.863 kb on + strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.864 kb on - strand, within LRK53_RS01825at 426.912 kb on - strand, within LRK53_RS01825at 427.055 kb on + strand, within LRK53_RS01825at 427.055 kb on + strand, within LRK53_RS01825at 427.055 kb on + strand, within LRK53_RS01825at 427.055 kb on + strand, within LRK53_RS01825at 427.055 kb on + strand, within LRK53_RS01825at 427.056 kb on - strand, within LRK53_RS01825at 427.056 kb on - strand, within LRK53_RS01825at 427.056 kb on - strand, within LRK53_RS01825at 427.056 kb on - strand, within LRK53_RS01825at 427.092 kb on - strand, within LRK53_RS01825at 427.133 kb on + strand, within LRK53_RS01825at 427.133 kb on + strand, within LRK53_RS01825at 427.134 kb on - strand, within LRK53_RS01825at 427.134 kb on - strand, within LRK53_RS01825at 427.134 kb on - strand, within LRK53_RS01825at 427.134 kb on - strand, within LRK53_RS01825at 427.134 kb on - strand, within LRK53_RS01825at 427.134 kb on - strand, within LRK53_RS01825at 427.134 kb on - strand, within LRK53_RS01825at 427.347 kb on + strandat 427.347 kb on + strandat 427.348 kb on - strandat 427.348 kb on - strandat 427.348 kb on - strandat 427.348 kb on - strandat 427.348 kb on - strandat 427.716 kb on + strand, within LRK53_RS01830at 427.716 kb on + strand, within LRK53_RS01830at 427.717 kb on - strand, within LRK53_RS01830at 427.717 kb on - strand, within LRK53_RS01830at 427.819 kb on - strand, within LRK53_RS01830at 427.945 kb on + strandat 427.945 kb on + strandat 427.945 kb on + strandat 427.945 kb on + strandat 427.946 kb on - strandat 427.946 kb on - strandat 427.946 kb on - strandat 427.946 kb on - strandat 427.946 kb on - strandat 427.946 kb on - strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.020 kb on + strandat 428.021 kb on - strandat 428.021 kb on - strandat 428.021 kb on - strandat 428.021 kb on - strandat 428.021 kb on - strandat 428.021 kb on - strandat 428.021 kb on - strandat 428.021 kb on - strandat 428.067 kb on - strandat 428.085 kb on + strandat 428.085 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
remove
426,475 + LRK53_RS01820 0.46 -1.0
426,476 - LRK53_RS01820 0.47 +0.1
426,476 - LRK53_RS01820 0.47 +1.3
426,476 - LRK53_RS01820 0.47 -0.7
426,476 - LRK53_RS01820 0.47 +2.3
426,526 + LRK53_RS01820 0.59 -1.8
426,526 + LRK53_RS01820 0.59 -0.2
426,526 + LRK53_RS01820 0.59 -0.2
426,526 + LRK53_RS01820 0.59 +1.3
426,526 + LRK53_RS01820 0.59 +0.3
426,526 + LRK53_RS01820 0.59 +1.8
426,526 + LRK53_RS01820 0.59 -0.7
426,526 + LRK53_RS01820 0.59 -0.1
426,526 + LRK53_RS01820 0.59 -1.7
426,526 + LRK53_RS01820 0.59 +0.9
426,526 + LRK53_RS01820 0.59 -1.1
426,526 + LRK53_RS01820 0.59 +0.2
426,526 + LRK53_RS01820 0.59 +0.3
426,526 + LRK53_RS01820 0.59 +1.0
426,526 + LRK53_RS01820 0.59 +4.3
426,526 + LRK53_RS01820 0.59 -1.2
426,526 + LRK53_RS01820 0.59 -3.2
426,526 + LRK53_RS01820 0.59 +0.3
426,526 + LRK53_RS01820 0.59 -1.7
426,526 + LRK53_RS01820 0.59 +0.5
426,526 + LRK53_RS01820 0.59 +0.4
426,526 + LRK53_RS01820 0.59 -1.0
426,526 + LRK53_RS01820 0.59 +1.0
426,526 + LRK53_RS01820 0.59 +0.3
426,527 - LRK53_RS01820 0.59 +2.3
426,527 - LRK53_RS01820 0.59 +0.9
426,527 - LRK53_RS01820 0.59 +0.6
426,527 - LRK53_RS01820 0.59 -0.2
426,527 - LRK53_RS01820 0.59 +1.3
426,527 - LRK53_RS01820 0.59 +0.0
426,527 - LRK53_RS01820 0.59 -1.0
426,527 - LRK53_RS01820 0.59 +2.7
426,527 - LRK53_RS01820 0.59 -0.2
426,527 - LRK53_RS01820 0.59 +1.3
426,527 - LRK53_RS01820 0.59 -0.8
426,527 - LRK53_RS01820 0.59 -0.1
426,527 - LRK53_RS01820 0.59 +0.0
426,527 - LRK53_RS01820 0.59 +2.3
426,527 - LRK53_RS01820 0.59 +0.8
426,559 + LRK53_RS01820 0.66 -0.9
426,559 + LRK53_RS01820 0.66 -0.2
426,559 + LRK53_RS01820 0.66 -0.1
426,559 + LRK53_RS01820 0.66 -0.6
426,559 + LRK53_RS01820 0.66 +0.0
426,559 + LRK53_RS01820 0.66 +0.0
426,559 + LRK53_RS01820 0.66 -0.1
426,559 + LRK53_RS01820 0.66 +1.3
426,560 - LRK53_RS01820 0.67 -1.2
426,560 - LRK53_RS01820 0.67 -1.0
426,560 - LRK53_RS01820 0.67 -0.2
426,560 - LRK53_RS01820 0.67 -0.2
426,560 - LRK53_RS01820 0.67 +0.9
426,560 - LRK53_RS01820 0.67 +1.3
426,697 + -1.2
426,697 + +0.9
426,751 + +0.0
426,751 + -2.2
426,774 + LRK53_RS01825 0.12 +0.9
426,774 + LRK53_RS01825 0.12 -1.7
426,774 + LRK53_RS01825 0.12 +0.2
426,774 + LRK53_RS01825 0.12 +0.5
426,774 + LRK53_RS01825 0.12 +0.3
426,774 + LRK53_RS01825 0.12 +1.0
426,775 - LRK53_RS01825 0.12 +0.3
426,775 - LRK53_RS01825 0.12 -1.2
426,775 - LRK53_RS01825 0.12 +1.7
426,775 - LRK53_RS01825 0.12 -0.3
426,775 - LRK53_RS01825 0.12 +0.8
426,775 - LRK53_RS01825 0.12 -1.5
426,775 - LRK53_RS01825 0.12 -1.8
426,775 - LRK53_RS01825 0.12 +0.3
426,863 + LRK53_RS01825 0.25 -1.0
426,863 + LRK53_RS01825 0.25 -0.2
426,863 + LRK53_RS01825 0.25 +0.9
426,863 + LRK53_RS01825 0.25 +1.0
426,863 + LRK53_RS01825 0.25 +0.1
426,863 + LRK53_RS01825 0.25 -1.2
426,863 + LRK53_RS01825 0.25 -0.9
426,863 + LRK53_RS01825 0.25 +0.3
426,863 + LRK53_RS01825 0.25 -0.4
426,863 + LRK53_RS01825 0.25 +0.3
426,863 + LRK53_RS01825 0.25 -0.4
426,864 - LRK53_RS01825 0.26 +0.6
426,864 - LRK53_RS01825 0.26 +0.5
426,864 - LRK53_RS01825 0.26 -0.4
426,864 - LRK53_RS01825 0.26 -0.8
426,864 - LRK53_RS01825 0.26 -0.3
426,864 - LRK53_RS01825 0.26 -1.5
426,864 - LRK53_RS01825 0.26 -0.7
426,864 - LRK53_RS01825 0.26 -0.5
426,912 - LRK53_RS01825 0.33 -0.1
427,055 + LRK53_RS01825 0.55 -0.9
427,055 + LRK53_RS01825 0.55 +1.3
427,055 + LRK53_RS01825 0.55 +0.8
427,055 + LRK53_RS01825 0.55 -0.5
427,055 + LRK53_RS01825 0.55 -0.2
427,056 - LRK53_RS01825 0.55 +0.7
427,056 - LRK53_RS01825 0.55 -0.0
427,056 - LRK53_RS01825 0.55 +1.3
427,056 - LRK53_RS01825 0.55 -2.2
427,092 - LRK53_RS01825 0.61 -0.3
427,133 + LRK53_RS01825 0.67 -1.0
427,133 + LRK53_RS01825 0.67 -0.7
427,134 - LRK53_RS01825 0.68 -1.8
427,134 - LRK53_RS01825 0.68 +0.2
427,134 - LRK53_RS01825 0.68 -1.2
427,134 - LRK53_RS01825 0.68 +0.0
427,134 - LRK53_RS01825 0.68 -0.1
427,134 - LRK53_RS01825 0.68 -0.7
427,134 - LRK53_RS01825 0.68 -1.6
427,347 + +0.9
427,347 + -0.0
427,348 - -0.2
427,348 - -1.2
427,348 - +0.6
427,348 - -1.8
427,348 - -0.8
427,716 + LRK53_RS01830 0.56 -2.6
427,716 + LRK53_RS01830 0.56 +0.1
427,717 - LRK53_RS01830 0.56 -0.7
427,717 - LRK53_RS01830 0.56 -1.7
427,819 - LRK53_RS01830 0.72 +0.0
427,945 + +0.2
427,945 + -0.2
427,945 + +1.3
427,945 + -1.2
427,946 - -0.8
427,946 - -1.5
427,946 - +0.3
427,946 - +1.3
427,946 - -2.6
427,946 - -1.2
428,020 + -0.9
428,020 + -2.1
428,020 + +0.3
428,020 + +0.1
428,020 + +0.3
428,020 + -2.9
428,020 + +0.1
428,020 + +0.3
428,020 + -0.0
428,021 - +0.3
428,021 - -2.4
428,021 - +0.2
428,021 - +0.3
428,021 - -0.7
428,021 - +0.0
428,021 - +0.7
428,021 - +0.6
428,067 - +0.5
428,085 + -0.7
428,085 + +0.3

Or see this region's nucleotide sequence