Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01630

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01620 and LRK53_RS01625 are separated by 133 nucleotidesLRK53_RS01625 and LRK53_RS01630 overlap by 1 nucleotidesLRK53_RS01630 and LRK53_RS01635 are separated by 72 nucleotides LRK53_RS01620: LRK53_RS01620 - type II 3-dehydroquinate dehydratase, at 382,934 to 383,386 _RS01620 LRK53_RS01625: LRK53_RS01625 - TlpA family protein disulfide reductase, at 383,520 to 384,059 _RS01625 LRK53_RS01630: LRK53_RS01630 - protein-disulfide reductase DsbD, at 384,059 to 386,248 _RS01630 LRK53_RS01635: LRK53_RS01635 - DMT family transporter, at 386,321 to 387,217 _RS01635 Position (kb) 384 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.320 kb on - strand, within LRK53_RS01620at 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.345 kb on + strandat 383.346 kb on - strandat 383.346 kb on - strandat 383.346 kb on - strandat 383.346 kb on - strandat 383.346 kb on - strandat 383.346 kb on - strandat 383.446 kb on - strandat 383.446 kb on - strandat 383.516 kb on + strandat 383.517 kb on - strandat 383.517 kb on - strandat 383.517 kb on - strandat 383.517 kb on - strandat 383.624 kb on + strand, within LRK53_RS01625at 383.625 kb on - strand, within LRK53_RS01625at 383.625 kb on - strand, within LRK53_RS01625at 383.625 kb on - strand, within LRK53_RS01625at 383.625 kb on - strand, within LRK53_RS01625at 383.626 kb on + strand, within LRK53_RS01625at 383.626 kb on + strand, within LRK53_RS01625at 383.645 kb on + strand, within LRK53_RS01625at 383.645 kb on + strand, within LRK53_RS01625at 383.646 kb on - strand, within LRK53_RS01625at 383.701 kb on + strand, within LRK53_RS01625at 383.701 kb on + strand, within LRK53_RS01625at 385.600 kb on - strand, within LRK53_RS01630at 385.600 kb on - strand, within LRK53_RS01630at 385.600 kb on - strand, within LRK53_RS01630at 385.600 kb on - strand, within LRK53_RS01630at 385.603 kb on - strand, within LRK53_RS01630at 386.283 kb on + strandat 386.284 kb on - strandat 386.284 kb on - strandat 386.284 kb on - strandat 386.314 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.322 kb on + strandat 386.323 kb on - strandat 386.323 kb on - strandat 386.323 kb on - strandat 386.487 kb on + strand, within LRK53_RS01635at 386.547 kb on + strand, within LRK53_RS01635at 386.547 kb on + strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.548 kb on - strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.721 kb on + strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.722 kb on - strand, within LRK53_RS01635at 386.739 kb on + strand, within LRK53_RS01635at 386.739 kb on + strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.740 kb on - strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.861 kb on + strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 386.862 kb on - strand, within LRK53_RS01635at 387.201 kb on + strandat 387.201 kb on + strandat 387.201 kb on + strandat 387.202 kb on - strandat 387.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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383,320 - LRK53_RS01620 0.85 -2.4
383,320 - LRK53_RS01620 0.85 -0.6
383,320 - LRK53_RS01620 0.85 +0.3
383,320 - LRK53_RS01620 0.85 -0.7
383,320 - LRK53_RS01620 0.85 +1.3
383,345 + -2.2
383,345 + -2.6
383,345 + -1.2
383,345 + -0.2
383,345 + -1.5
383,345 + -0.2
383,345 + -1.7
383,345 + -2.6
383,345 + +0.3
383,345 + -1.8
383,346 - -1.2
383,346 - +0.0
383,346 - +1.0
383,346 - +2.3
383,346 - +0.0
383,346 - -1.3
383,446 - -0.2
383,446 - +0.6
383,516 + +0.3
383,517 - -0.2
383,517 - -0.6
383,517 - +0.2
383,517 - +0.3
383,624 + LRK53_RS01625 0.19 -3.1
383,625 - LRK53_RS01625 0.19 +2.0
383,625 - LRK53_RS01625 0.19 +0.5
383,625 - LRK53_RS01625 0.19 -0.2
383,625 - LRK53_RS01625 0.19 +1.1
383,626 + LRK53_RS01625 0.20 -1.5
383,626 + LRK53_RS01625 0.20 -2.1
383,645 + LRK53_RS01625 0.23 -0.3
383,645 + LRK53_RS01625 0.23 -0.7
383,646 - LRK53_RS01625 0.23 -0.5
383,701 + LRK53_RS01625 0.34 -0.2
383,701 + LRK53_RS01625 0.34 -1.5
385,600 - LRK53_RS01630 0.70 +0.8
385,600 - LRK53_RS01630 0.70 -0.6
385,600 - LRK53_RS01630 0.70 -0.4
385,600 - LRK53_RS01630 0.70 -1.6
385,603 - LRK53_RS01630 0.71 -2.6
386,283 + -0.6
386,284 - -0.9
386,284 - -1.5
386,284 - -0.1
386,314 + -0.6
386,322 + -0.4
386,322 + +0.2
386,322 + -1.2
386,322 + -1.6
386,322 + -2.3
386,322 + -3.3
386,322 + +0.0
386,322 + -0.6
386,323 - -0.2
386,323 - +1.4
386,323 - +0.4
386,487 + LRK53_RS01635 0.19 -0.2
386,547 + LRK53_RS01635 0.25 +1.7
386,547 + LRK53_RS01635 0.25 -1.5
386,548 - LRK53_RS01635 0.25 -0.2
386,548 - LRK53_RS01635 0.25 +0.7
386,548 - LRK53_RS01635 0.25 +1.4
386,548 - LRK53_RS01635 0.25 +0.8
386,548 - LRK53_RS01635 0.25 -0.6
386,548 - LRK53_RS01635 0.25 -1.1
386,548 - LRK53_RS01635 0.25 -0.1
386,548 - LRK53_RS01635 0.25 -0.6
386,548 - LRK53_RS01635 0.25 -0.6
386,548 - LRK53_RS01635 0.25 -2.1
386,548 - LRK53_RS01635 0.25 +0.4
386,548 - LRK53_RS01635 0.25 -0.6
386,548 - LRK53_RS01635 0.25 -2.1
386,721 + LRK53_RS01635 0.45 -2.5
386,721 + LRK53_RS01635 0.45 -0.7
386,721 + LRK53_RS01635 0.45 -0.0
386,721 + LRK53_RS01635 0.45 -0.6
386,721 + LRK53_RS01635 0.45 -0.4
386,721 + LRK53_RS01635 0.45 -1.5
386,721 + LRK53_RS01635 0.45 +2.4
386,721 + LRK53_RS01635 0.45 +0.8
386,721 + LRK53_RS01635 0.45 -0.5
386,721 + LRK53_RS01635 0.45 +0.4
386,721 + LRK53_RS01635 0.45 -1.2
386,721 + LRK53_RS01635 0.45 -0.2
386,721 + LRK53_RS01635 0.45 +0.1
386,721 + LRK53_RS01635 0.45 -0.6
386,721 + LRK53_RS01635 0.45 -0.6
386,721 + LRK53_RS01635 0.45 -1.0
386,721 + LRK53_RS01635 0.45 -0.2
386,721 + LRK53_RS01635 0.45 -0.6
386,721 + LRK53_RS01635 0.45 -0.3
386,722 - LRK53_RS01635 0.45 -0.4
386,722 - LRK53_RS01635 0.45 -1.1
386,722 - LRK53_RS01635 0.45 -0.9
386,722 - LRK53_RS01635 0.45 +0.4
386,722 - LRK53_RS01635 0.45 -0.9
386,722 - LRK53_RS01635 0.45 -1.2
386,722 - LRK53_RS01635 0.45 +0.4
386,722 - LRK53_RS01635 0.45 -0.5
386,722 - LRK53_RS01635 0.45 -0.6
386,722 - LRK53_RS01635 0.45 +1.4
386,722 - LRK53_RS01635 0.45 +3.4
386,722 - LRK53_RS01635 0.45 +0.4
386,722 - LRK53_RS01635 0.45 +0.4
386,739 + LRK53_RS01635 0.47 -0.2
386,739 + LRK53_RS01635 0.47 -1.6
386,740 - LRK53_RS01635 0.47 +0.8
386,740 - LRK53_RS01635 0.47 -2.1
386,740 - LRK53_RS01635 0.47 -1.2
386,740 - LRK53_RS01635 0.47 -1.0
386,740 - LRK53_RS01635 0.47 -0.5
386,740 - LRK53_RS01635 0.47 +1.4
386,861 + LRK53_RS01635 0.60 +0.4
386,861 + LRK53_RS01635 0.60 -0.8
386,861 + LRK53_RS01635 0.60 +0.4
386,861 + LRK53_RS01635 0.60 +0.5
386,861 + LRK53_RS01635 0.60 -0.1
386,861 + LRK53_RS01635 0.60 -1.5
386,861 + LRK53_RS01635 0.60 -1.8
386,861 + LRK53_RS01635 0.60 -0.9
386,861 + LRK53_RS01635 0.60 -1.0
386,861 + LRK53_RS01635 0.60 -1.0
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 +0.9
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 -0.8
386,861 + LRK53_RS01635 0.60 -1.8
386,861 + LRK53_RS01635 0.60 -1.6
386,861 + LRK53_RS01635 0.60 -1.8
386,861 + LRK53_RS01635 0.60 +1.8
386,861 + LRK53_RS01635 0.60 -0.5
386,861 + LRK53_RS01635 0.60 -0.2
386,861 + LRK53_RS01635 0.60 -1.0
386,861 + LRK53_RS01635 0.60 -1.6
386,861 + LRK53_RS01635 0.60 +1.0
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 +0.4
386,861 + LRK53_RS01635 0.60 -0.4
386,861 + LRK53_RS01635 0.60 +0.4
386,861 + LRK53_RS01635 0.60 -1.0
386,861 + LRK53_RS01635 0.60 -0.6
386,861 + LRK53_RS01635 0.60 -0.2
386,861 + LRK53_RS01635 0.60 +1.4
386,861 + LRK53_RS01635 0.60 -0.4
386,862 - LRK53_RS01635 0.60 -0.8
386,862 - LRK53_RS01635 0.60 +1.2
386,862 - LRK53_RS01635 0.60 -0.2
386,862 - LRK53_RS01635 0.60 -2.3
386,862 - LRK53_RS01635 0.60 -3.0
386,862 - LRK53_RS01635 0.60 -0.1
386,862 - LRK53_RS01635 0.60 -1.2
386,862 - LRK53_RS01635 0.60 -0.9
386,862 - LRK53_RS01635 0.60 -1.3
386,862 - LRK53_RS01635 0.60 -0.1
386,862 - LRK53_RS01635 0.60 +0.0
386,862 - LRK53_RS01635 0.60 +1.4
386,862 - LRK53_RS01635 0.60 -0.6
386,862 - LRK53_RS01635 0.60 -0.8
386,862 - LRK53_RS01635 0.60 +0.9
386,862 - LRK53_RS01635 0.60 -0.2
386,862 - LRK53_RS01635 0.60 +1.0
386,862 - LRK53_RS01635 0.60 -0.2
386,862 - LRK53_RS01635 0.60 +0.4
386,862 - LRK53_RS01635 0.60 +1.1
386,862 - LRK53_RS01635 0.60 -0.2
386,862 - LRK53_RS01635 0.60 +0.4
386,862 - LRK53_RS01635 0.60 -1.5
386,862 - LRK53_RS01635 0.60 -0.9
386,862 - LRK53_RS01635 0.60 -1.5
386,862 - LRK53_RS01635 0.60 +1.1
386,862 - LRK53_RS01635 0.60 +1.4
386,862 - LRK53_RS01635 0.60 +0.4
386,862 - LRK53_RS01635 0.60 +0.1
386,862 - LRK53_RS01635 0.60 -0.7
386,862 - LRK53_RS01635 0.60 -1.3
386,862 - LRK53_RS01635 0.60 +0.1
386,862 - LRK53_RS01635 0.60 +1.4
386,862 - LRK53_RS01635 0.60 -1.3
386,862 - LRK53_RS01635 0.60 -1.0
386,862 - LRK53_RS01635 0.60 -1.3
387,201 + -2.4
387,201 + -0.9
387,201 + +2.9
387,202 - -0.5
387,202 - -0.2

Or see this region's nucleotide sequence