Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01565

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01560 and LRK53_RS01565 are separated by 76 nucleotidesLRK53_RS01565 and LRK53_RS01570 are separated by 484 nucleotides LRK53_RS01560: LRK53_RS01560 - UvrD-helicase domain-containing protein, at 368,923 to 371,238 _RS01560 LRK53_RS01565: LRK53_RS01565 - hypothetical protein, at 371,315 to 371,533 _RS01565 LRK53_RS01570: LRK53_RS01570 - DNA polymerase I, at 372,018 to 374,795 _RS01570 Position (kb) 371 372Strain fitness (log2 ratio) -2 -1 0 1at 371.250 kb on + strandat 371.250 kb on + strandat 371.250 kb on + strandat 371.250 kb on + strandat 371.251 kb on - strandat 371.251 kb on - strandat 371.457 kb on + strand, within LRK53_RS01565at 371.457 kb on + strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.458 kb on - strand, within LRK53_RS01565at 371.565 kb on + strandat 371.565 kb on + strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.761 kb on + strandat 371.762 kb on - strandat 371.762 kb on - strandat 371.762 kb on - strandat 371.787 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.824 kb on + strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.825 kb on - strandat 371.900 kb on + strandat 371.900 kb on + strandat 371.900 kb on + strandat 371.901 kb on - strandat 371.901 kb on - strandat 371.901 kb on - strandat 371.972 kb on + strandat 372.442 kb on + strand, within LRK53_RS01570at 372.442 kb on + strand, within LRK53_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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371,250 + -0.3
371,250 + +0.3
371,250 + +0.2
371,250 + -1.6
371,251 - +0.6
371,251 - -0.6
371,457 + LRK53_RS01565 0.65 -1.0
371,457 + LRK53_RS01565 0.65 -1.4
371,458 - LRK53_RS01565 0.65 -1.8
371,458 - LRK53_RS01565 0.65 -0.7
371,458 - LRK53_RS01565 0.65 -0.7
371,458 - LRK53_RS01565 0.65 +0.3
371,458 - LRK53_RS01565 0.65 +0.5
371,565 + -0.5
371,565 + +0.1
371,566 - -0.8
371,566 - +0.3
371,566 - -2.0
371,761 + -0.9
371,762 - -1.2
371,762 - -0.7
371,762 - +0.3
371,787 + +1.3
371,824 + +1.3
371,824 + +0.8
371,824 + -0.5
371,824 + -1.9
371,824 + -0.3
371,824 + -0.2
371,824 + -0.9
371,824 + -1.1
371,824 + -0.7
371,824 + +0.3
371,825 - +1.3
371,825 - -0.4
371,825 - -1.2
371,825 - -0.2
371,825 - -1.0
371,900 + +0.0
371,900 + +0.5
371,900 + +1.0
371,901 - -0.9
371,901 - -1.1
371,901 - -2.4
371,972 + -0.9
372,442 + LRK53_RS01570 0.15 +1.3
372,442 + LRK53_RS01570 0.15 -0.1

Or see this region's nucleotide sequence