Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01315 and LRK53_RS01320 are separated by 542 nucleotides LRK53_RS01320 and LRK53_RS01325 are separated by 156 nucleotides LRK53_RS01325 and LRK53_RS01330 are separated by 21 nucleotides LRK53_RS01330 and LRK53_RS01335 are separated by 435 nucleotides
LRK53_RS01315: LRK53_RS01315 - heme o synthase, at 322,982 to 323,884
_RS01315
LRK53_RS01320: LRK53_RS01320 - hypothetical protein, at 324,427 to 324,660
_RS01320
LRK53_RS01325: LRK53_RS01325 - magnesium-translocating P-type ATPase, at 324,817 to 327,471
_RS01325
LRK53_RS01330: LRK53_RS01330 - hypothetical protein, at 327,493 to 327,738
_RS01330
LRK53_RS01335: LRK53_RS01335 - bile acid:sodium symporter, at 328,174 to 329,169
_RS01335
Position (kb) 324
325
326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.188 kb on - strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.243 kb on + strand at 324.244 kb on - strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.264 kb on + strand at 324.264 kb on + strand at 324.265 kb on - strand at 324.265 kb on - strand at 324.265 kb on - strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.369 kb on + strand at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.647 kb on + strand at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.299 kb on - strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.505 kb on - strand, within LRK53_RS01325 at 325.570 kb on + strand, within LRK53_RS01325 at 325.985 kb on - strand, within LRK53_RS01325 at 325.991 kb on - strand, within LRK53_RS01325 at 325.991 kb on - strand, within LRK53_RS01325 at 325.991 kb on - strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 326.980 kb on + strand, within LRK53_RS01325 at 327.028 kb on + strand, within LRK53_RS01325 at 327.028 kb on + strand, within LRK53_RS01325 at 327.029 kb on - strand, within LRK53_RS01325 at 327.029 kb on - strand, within LRK53_RS01325 at 327.076 kb on - strand, within LRK53_RS01325 at 327.409 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.965 kb on - strand at 327.965 kb on - strand at 328.003 kb on + strand at 328.004 kb on - strand at 328.130 kb on + strand at 328.220 kb on + strand at 328.221 kb on - strand at 328.221 kb on - strand at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 324,187 + -0.2 324,187 + -2.2 324,187 + -1.8 324,187 + -2.3 324,187 + -1.0 324,187 + +0.6 324,187 + -0.4 324,188 - -0.2 324,195 + +0.8 324,195 + +0.8 324,195 + +1.8 324,195 + -0.6 324,195 + -0.6 324,196 - -0.6 324,196 - -0.4 324,196 - +1.8 324,196 - +0.9 324,196 - +0.4 324,243 + -0.5 324,244 - -0.8 324,254 + -0.2 324,254 + -0.1 324,254 + -2.0 324,254 + -0.2 324,254 + -1.0 324,254 + +0.0 324,254 + -1.4 324,254 + -1.3 324,254 + -1.3 324,254 + -0.8 324,254 + -0.7 324,254 + -1.6 324,254 + -0.3 324,254 + -1.2 324,254 + -0.2 324,254 + -2.8 324,254 + -1.7 324,255 - -1.0 324,255 - -0.9 324,255 - -0.8 324,255 - -0.9 324,255 - -0.2 324,264 + -1.4 324,264 + -2.1 324,265 - -0.6 324,265 - -0.6 324,265 - +0.6 324,269 + +0.2 324,269 + +0.2 324,269 + -1.6 324,269 + -0.6 324,314 + -1.8 324,314 + +1.0 324,314 + -1.0 324,314 + -1.2 324,315 - -1.0 324,315 - -0.4 324,315 - +0.0 324,315 - -0.5 324,315 - +0.4 324,369 + -1.3 324,508 + LRK53_RS01320 0.35 +4.4 324,508 + LRK53_RS01320 0.35 +0.9 324,508 + LRK53_RS01320 0.35 -1.3 324,509 - LRK53_RS01320 0.35 +0.0 324,509 - LRK53_RS01320 0.35 +1.4 324,509 - LRK53_RS01320 0.35 -0.5 324,509 - LRK53_RS01320 0.35 -0.7 324,509 - LRK53_RS01320 0.35 +0.6 324,509 - LRK53_RS01320 0.35 -1.3 324,509 - LRK53_RS01320 0.35 -0.2 324,647 + -0.4 325,170 - LRK53_RS01325 0.13 -2.1 325,170 - LRK53_RS01325 0.13 +0.9 325,170 - LRK53_RS01325 0.13 +1.4 325,170 - LRK53_RS01325 0.13 +2.4 325,299 - LRK53_RS01325 0.18 +0.2 325,504 + LRK53_RS01325 0.26 -0.2 325,504 + LRK53_RS01325 0.26 +0.0 325,504 + LRK53_RS01325 0.26 -1.0 325,504 + LRK53_RS01325 0.26 +1.4 325,505 - LRK53_RS01325 0.26 -2.2 325,570 + LRK53_RS01325 0.28 -0.6 325,985 - LRK53_RS01325 0.44 +0.4 325,991 - LRK53_RS01325 0.44 +0.4 325,991 - LRK53_RS01325 0.44 +0.2 325,991 - LRK53_RS01325 0.44 -1.1 326,863 + LRK53_RS01325 0.77 +0.8 326,863 + LRK53_RS01325 0.77 -1.0 326,863 + LRK53_RS01325 0.77 -1.0 326,863 + LRK53_RS01325 0.77 +2.9 326,863 + LRK53_RS01325 0.77 -0.2 326,863 + LRK53_RS01325 0.77 +0.4 326,864 - LRK53_RS01325 0.77 -1.4 326,864 - LRK53_RS01325 0.77 +1.4 326,980 + LRK53_RS01325 0.81 +0.4 327,028 + LRK53_RS01325 0.83 -0.2 327,028 + LRK53_RS01325 0.83 -0.6 327,029 - LRK53_RS01325 0.83 +1.4 327,029 - LRK53_RS01325 0.83 -1.4 327,076 - LRK53_RS01325 0.85 +0.6 327,409 + -0.2 327,442 + -1.2 327,442 + -0.6 327,442 + +1.9 327,443 - -0.1 327,443 - +1.4 327,443 - -0.6 327,687 + LRK53_RS01330 0.79 -0.4 327,687 + LRK53_RS01330 0.79 -0.3 327,687 + LRK53_RS01330 0.79 +1.4 327,687 + LRK53_RS01330 0.79 +0.4 327,687 + LRK53_RS01330 0.79 -0.0 327,687 + LRK53_RS01330 0.79 -0.2 327,688 - LRK53_RS01330 0.79 +0.4 327,688 - LRK53_RS01330 0.79 -0.3 327,688 - LRK53_RS01330 0.79 -1.0 327,965 - -0.8 327,965 - +1.4 328,003 + -1.1 328,004 - +1.4 328,130 + -0.7 328,220 + +1.3 328,221 - -0.3 328,221 - -1.3 328,431 + LRK53_RS01335 0.26 -0.4 328,431 + LRK53_RS01335 0.26 -1.1 328,431 + LRK53_RS01335 0.26 -1.4 328,431 + LRK53_RS01335 0.26 -0.2 328,432 - LRK53_RS01335 0.26 -0.6 328,432 - LRK53_RS01335 0.26 -1.0 328,432 - LRK53_RS01335 0.26 -1.0 328,432 - LRK53_RS01335 0.26 -0.8 328,432 - LRK53_RS01335 0.26 +1.7 328,432 - LRK53_RS01335 0.26 +0.6 328,432 - LRK53_RS01335 0.26 -0.4
Or see this region's nucleotide sequence