Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00915

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00910 and LRK53_RS00915 overlap by 1 nucleotidesLRK53_RS00915 and LRK53_RS00920 overlap by 4 nucleotides LRK53_RS00910: LRK53_RS00910 - monovalent cation/H+ antiporter subunit A, at 230,272 to 233,166 _RS00910 LRK53_RS00915: LRK53_RS00915 - Na+/H+ antiporter subunit C, at 233,166 to 233,507 _RS00915 LRK53_RS00920: LRK53_RS00920 - monovalent cation/H+ antiporter subunit D, at 233,504 to 235,099 _RS00920 Position (kb) 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.417 kb on + strand, within LRK53_RS00910at 232.751 kb on + strand, within LRK53_RS00910at 232.752 kb on - strand, within LRK53_RS00910at 232.752 kb on - strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 233.197 kb on + strandat 233.198 kb on - strandat 233.274 kb on + strand, within LRK53_RS00915at 233.275 kb on - strand, within LRK53_RS00915at 233.275 kb on - strand, within LRK53_RS00915at 233.364 kb on + strand, within LRK53_RS00915at 233.687 kb on + strand, within LRK53_RS00920at 233.937 kb on - strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.270 kb on - strand, within LRK53_RS00920

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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232,417 + LRK53_RS00910 0.74 -0.3
232,417 + LRK53_RS00910 0.74 +1.4
232,417 + LRK53_RS00910 0.74 +1.8
232,417 + LRK53_RS00910 0.74 +0.4
232,417 + LRK53_RS00910 0.74 +1.4
232,751 + LRK53_RS00910 0.86 +1.1
232,752 - LRK53_RS00910 0.86 -1.2
232,752 - LRK53_RS00910 0.86 -1.1
232,852 + LRK53_RS00910 0.89 +1.4
232,852 + LRK53_RS00910 0.89 -1.1
232,852 + LRK53_RS00910 0.89 -0.7
232,852 + LRK53_RS00910 0.89 +0.3
232,852 + LRK53_RS00910 0.89 +0.9
232,852 + LRK53_RS00910 0.89 -1.3
232,852 + LRK53_RS00910 0.89 +0.3
232,852 + LRK53_RS00910 0.89 -1.4
232,853 - LRK53_RS00910 0.89 -2.2
232,853 - LRK53_RS00910 0.89 +0.4
232,853 - LRK53_RS00910 0.89 -0.6
232,853 - LRK53_RS00910 0.89 +0.3
232,853 - LRK53_RS00910 0.89 -0.1
232,853 - LRK53_RS00910 0.89 +1.4
233,197 + -1.2
233,198 - -0.2
233,274 + LRK53_RS00915 0.32 -2.1
233,275 - LRK53_RS00915 0.32 -1.4
233,275 - LRK53_RS00915 0.32 +0.1
233,364 + LRK53_RS00915 0.58 -0.9
233,687 + LRK53_RS00920 0.11 -0.9
233,937 - LRK53_RS00920 0.27 -0.1
233,990 + LRK53_RS00920 0.30 +2.1
233,990 + LRK53_RS00920 0.30 +0.5
233,990 + LRK53_RS00920 0.30 +0.0
233,990 + LRK53_RS00920 0.30 -0.7
233,990 + LRK53_RS00920 0.30 +0.4
233,990 + LRK53_RS00920 0.30 -0.2
233,990 + LRK53_RS00920 0.30 +0.4
233,990 + LRK53_RS00920 0.30 +0.1
233,990 + LRK53_RS00920 0.30 +0.4
233,991 - LRK53_RS00920 0.31 +0.0
233,991 - LRK53_RS00920 0.31 +2.4
233,991 - LRK53_RS00920 0.31 +0.8
234,209 + LRK53_RS00920 0.44 -1.2
234,209 + LRK53_RS00920 0.44 +0.5
234,209 + LRK53_RS00920 0.44 +0.6
234,209 + LRK53_RS00920 0.44 -1.2
234,210 - LRK53_RS00920 0.44 -0.4
234,210 - LRK53_RS00920 0.44 +0.7
234,210 - LRK53_RS00920 0.44 -0.2
234,210 - LRK53_RS00920 0.44 -0.3
234,210 - LRK53_RS00920 0.44 -0.2
234,210 - LRK53_RS00920 0.44 +3.0
234,269 + LRK53_RS00920 0.48 +0.4
234,269 + LRK53_RS00920 0.48 -1.1
234,270 - LRK53_RS00920 0.48 -1.6

Or see this region's nucleotide sequence