Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00775 and LRK53_RS00780 are separated by 43 nucleotides LRK53_RS00780 and LRK53_RS00785 are separated by 51 nucleotides LRK53_RS00785 and LRK53_RS00790 are separated by 94 nucleotides
LRK53_RS00775: LRK53_RS00775 - metalloregulator ArsR/SmtB family transcription factor, at 182,015 to 182,365
_RS00775
LRK53_RS00780: LRK53_RS00780 - MBL fold metallo-hydrolase, at 182,409 to 183,275
_RS00780
LRK53_RS00785: LRK53_RS00785 - membrane protein, at 183,327 to 184,184
_RS00785
LRK53_RS00790: LRK53_RS00790 - peptidase S10, at 184,279 to 185,880
_RS00790
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 182.463 kb on + strand at 182.463 kb on + strand at 182.463 kb on + strand at 182.463 kb on + strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.521 kb on - strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.653 kb on - strand, within LRK53_RS00780 at 182.653 kb on - strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.846 kb on + strand, within LRK53_RS00780 at 182.847 kb on - strand, within LRK53_RS00780 at 182.847 kb on - strand, within LRK53_RS00780 at 182.847 kb on - strand, within LRK53_RS00780 at 182.847 kb on - strand, within LRK53_RS00780 at 182.847 kb on - strand, within LRK53_RS00780 at 182.964 kb on + strand, within LRK53_RS00780 at 182.964 kb on + strand, within LRK53_RS00780 at 182.965 kb on - strand, within LRK53_RS00780 at 182.965 kb on - strand, within LRK53_RS00780 at 183.027 kb on + strand, within LRK53_RS00780 at 183.027 kb on + strand, within LRK53_RS00780 at 183.027 kb on + strand, within LRK53_RS00780 at 183.028 kb on - strand, within LRK53_RS00780 at 183.028 kb on - strand, within LRK53_RS00780 at 183.028 kb on - strand, within LRK53_RS00780 at 183.028 kb on - strand, within LRK53_RS00780 at 183.028 kb on - strand, within LRK53_RS00780 at 183.246 kb on + strand at 183.246 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.333 kb on + strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.334 kb on - strand at 183.337 kb on + strand at 183.337 kb on + strand at 183.337 kb on + strand at 183.337 kb on + strand at 183.337 kb on + strand at 183.338 kb on - strand at 183.338 kb on - strand at 183.338 kb on - strand at 183.338 kb on - strand at 183.338 kb on - strand at 183.432 kb on + strand, within LRK53_RS00785 at 183.432 kb on + strand, within LRK53_RS00785 at 183.432 kb on + strand, within LRK53_RS00785 at 183.432 kb on + strand, within LRK53_RS00785 at 183.432 kb on + strand, within LRK53_RS00785 at 183.432 kb on + strand, within LRK53_RS00785 at 183.432 kb on + strand, within LRK53_RS00785 at 183.432 kb on + strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.433 kb on - strand, within LRK53_RS00785 at 183.772 kb on - strand, within LRK53_RS00785 at 183.841 kb on + strand, within LRK53_RS00785 at 184.002 kb on + strand, within LRK53_RS00785 at 184.002 kb on + strand, within LRK53_RS00785 at 184.002 kb on + strand, within LRK53_RS00785 at 184.002 kb on + strand, within LRK53_RS00785 at 184.003 kb on - strand, within LRK53_RS00785 at 184.003 kb on - strand, within LRK53_RS00785 at 184.176 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.226 kb on + strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.227 kb on - strand at 184.456 kb on + strand, within LRK53_RS00790 at 184.457 kb on - strand, within LRK53_RS00790 at 184.457 kb on - strand, within LRK53_RS00790 at 184.457 kb on - strand, within LRK53_RS00790 at 184.457 kb on - strand, within LRK53_RS00790 at 184.531 kb on + strand, within LRK53_RS00790 at 184.531 kb on + strand, within LRK53_RS00790 at 184.531 kb on + strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.532 kb on - strand, within LRK53_RS00790 at 184.540 kb on + strand, within LRK53_RS00790 at 184.540 kb on + strand, within LRK53_RS00790 at 184.540 kb on + strand, within LRK53_RS00790 at 184.541 kb on - strand, within LRK53_RS00790 at 184.541 kb on - strand, within LRK53_RS00790 at 184.541 kb on - strand, within LRK53_RS00790 at 184.588 kb on + strand, within LRK53_RS00790 at 184.588 kb on + strand, within LRK53_RS00790 at 184.588 kb on + strand, within LRK53_RS00790 at 184.588 kb on + strand, within LRK53_RS00790 at 184.588 kb on + strand, within LRK53_RS00790 at 184.588 kb on + strand, within LRK53_RS00790 at 184.589 kb on - strand, within LRK53_RS00790 at 184.589 kb on - strand, within LRK53_RS00790 at 184.589 kb on - strand, within LRK53_RS00790 at 184.589 kb on - strand, within LRK53_RS00790 at 184.589 kb on - strand, within LRK53_RS00790 at 184.674 kb on + strand, within LRK53_RS00790 at 184.674 kb on + strand, within LRK53_RS00790 at 184.674 kb on + strand, within LRK53_RS00790 at 184.674 kb on + strand, within LRK53_RS00790 at 184.675 kb on - strand, within LRK53_RS00790 at 184.675 kb on - strand, within LRK53_RS00790 at 184.691 kb on - strand, within LRK53_RS00790 at 184.711 kb on + strand, within LRK53_RS00790 at 184.712 kb on - strand, within LRK53_RS00790 at 184.712 kb on - strand, within LRK53_RS00790 at 184.712 kb on - strand, within LRK53_RS00790 at 184.712 kb on - strand, within LRK53_RS00790 at 184.840 kb on + strand, within LRK53_RS00790 at 184.840 kb on + strand, within LRK53_RS00790 at 184.840 kb on + strand, within LRK53_RS00790 at 184.840 kb on + strand, within LRK53_RS00790 at 184.840 kb on + strand, within LRK53_RS00790 at 184.840 kb on + strand, within LRK53_RS00790 at 184.840 kb on + strand, within LRK53_RS00790 at 184.841 kb on - strand, within LRK53_RS00790 at 184.841 kb on - strand, within LRK53_RS00790 at 184.841 kb on - strand, within LRK53_RS00790 at 184.841 kb on - strand, within LRK53_RS00790 at 184.900 kb on + strand, within LRK53_RS00790 at 184.900 kb on + strand, within LRK53_RS00790 at 184.900 kb on + strand, within LRK53_RS00790 at 184.901 kb on - strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.924 kb on + strand, within LRK53_RS00790 at 184.925 kb on - strand, within LRK53_RS00790 at 184.925 kb on - strand, within LRK53_RS00790 at 184.925 kb on - strand, within LRK53_RS00790 at 184.925 kb on - strand, within LRK53_RS00790 at 184.942 kb on + strand, within LRK53_RS00790 at 184.942 kb on + strand, within LRK53_RS00790 at 184.942 kb on + strand, within LRK53_RS00790 at 184.942 kb on + strand, within LRK53_RS00790 at 184.942 kb on + strand, within LRK53_RS00790 at 184.943 kb on - strand, within LRK53_RS00790 at 184.943 kb on - strand, within LRK53_RS00790 at 184.943 kb on - strand, within LRK53_RS00790 at 185.089 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.128 kb on + strand, within LRK53_RS00790 at 185.129 kb on - strand, within LRK53_RS00790 at 185.129 kb on - strand, within LRK53_RS00790
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 182,463 + -0.2 182,463 + +0.3 182,463 + -0.4 182,463 + -0.8 182,464 - +0.5 182,464 - -1.6 182,464 - +1.2 182,464 - -1.8 182,464 - -1.8 182,464 - -0.6 182,521 - LRK53_RS00780 0.13 +0.6 182,652 + LRK53_RS00780 0.28 -1.8 182,652 + LRK53_RS00780 0.28 +1.5 182,652 + LRK53_RS00780 0.28 -1.1 182,652 + LRK53_RS00780 0.28 -0.1 182,652 + LRK53_RS00780 0.28 -1.0 182,652 + LRK53_RS00780 0.28 -2.2 182,652 + LRK53_RS00780 0.28 -0.5 182,652 + LRK53_RS00780 0.28 -1.1 182,652 + LRK53_RS00780 0.28 -0.8 182,652 + LRK53_RS00780 0.28 -0.3 182,653 - LRK53_RS00780 0.28 +0.3 182,653 - LRK53_RS00780 0.28 -1.9 182,846 + LRK53_RS00780 0.50 -2.2 182,846 + LRK53_RS00780 0.50 -2.9 182,846 + LRK53_RS00780 0.50 +0.8 182,846 + LRK53_RS00780 0.50 -0.1 182,846 + LRK53_RS00780 0.50 +1.2 182,846 + LRK53_RS00780 0.50 -0.7 182,846 + LRK53_RS00780 0.50 +0.5 182,846 + LRK53_RS00780 0.50 -0.4 182,847 - LRK53_RS00780 0.51 -0.2 182,847 - LRK53_RS00780 0.51 +0.4 182,847 - LRK53_RS00780 0.51 -0.4 182,847 - LRK53_RS00780 0.51 +0.6 182,847 - LRK53_RS00780 0.51 +0.0 182,964 + LRK53_RS00780 0.64 -1.8 182,964 + LRK53_RS00780 0.64 -1.6 182,965 - LRK53_RS00780 0.64 +0.6 182,965 - LRK53_RS00780 0.64 +0.9 183,027 + LRK53_RS00780 0.71 -0.5 183,027 + LRK53_RS00780 0.71 -0.8 183,027 + LRK53_RS00780 0.71 -0.8 183,028 - LRK53_RS00780 0.71 +2.0 183,028 - LRK53_RS00780 0.71 +0.7 183,028 - LRK53_RS00780 0.71 +0.0 183,028 - LRK53_RS00780 0.71 -0.2 183,028 - LRK53_RS00780 0.71 -0.8 183,246 + -2.9 183,246 + -1.1 183,333 + -1.4 183,333 + +1.6 183,333 + -1.5 183,333 + -1.1 183,333 + -1.4 183,333 + -0.5 183,333 + -1.6 183,333 + -0.0 183,333 + -2.2 183,333 + +0.2 183,333 + -0.6 183,333 + +0.6 183,333 + -1.0 183,333 + +0.3 183,333 + +2.2 183,334 - -1.1 183,334 - -0.2 183,334 - -2.2 183,334 - +0.8 183,334 - -0.2 183,334 - -0.4 183,334 - -1.0 183,334 - -0.8 183,334 - +0.3 183,334 - -0.2 183,334 - -0.1 183,334 - -2.0 183,334 - -0.4 183,334 - +0.5 183,334 - +0.0 183,337 + +1.4 183,337 + +2.1 183,337 + +0.1 183,337 + +0.6 183,337 + -0.4 183,338 - -1.0 183,338 - -1.5 183,338 - -1.0 183,338 - +0.2 183,338 - +1.6 183,432 + LRK53_RS00785 0.12 +1.2 183,432 + LRK53_RS00785 0.12 -1.4 183,432 + LRK53_RS00785 0.12 +1.5 183,432 + LRK53_RS00785 0.12 +0.4 183,432 + LRK53_RS00785 0.12 -1.1 183,432 + LRK53_RS00785 0.12 -0.4 183,432 + LRK53_RS00785 0.12 -1.0 183,432 + LRK53_RS00785 0.12 -1.6 183,433 - LRK53_RS00785 0.12 -0.4 183,433 - LRK53_RS00785 0.12 -1.2 183,433 - LRK53_RS00785 0.12 +0.7 183,433 - LRK53_RS00785 0.12 +1.2 183,433 - LRK53_RS00785 0.12 -0.5 183,433 - LRK53_RS00785 0.12 -1.1 183,433 - LRK53_RS00785 0.12 -0.8 183,433 - LRK53_RS00785 0.12 -1.7 183,433 - LRK53_RS00785 0.12 -2.1 183,433 - LRK53_RS00785 0.12 -1.3 183,433 - LRK53_RS00785 0.12 +0.2 183,433 - LRK53_RS00785 0.12 -0.4 183,433 - LRK53_RS00785 0.12 -1.2 183,433 - LRK53_RS00785 0.12 -0.8 183,772 - LRK53_RS00785 0.52 -1.3 183,841 + LRK53_RS00785 0.60 +1.2 184,002 + LRK53_RS00785 0.79 -2.1 184,002 + LRK53_RS00785 0.79 -0.6 184,002 + LRK53_RS00785 0.79 -1.1 184,002 + LRK53_RS00785 0.79 -0.3 184,003 - LRK53_RS00785 0.79 +3.8 184,003 - LRK53_RS00785 0.79 -1.8 184,176 + -1.1 184,226 + -1.1 184,226 + -0.4 184,226 + -0.5 184,226 + -0.1 184,226 + +0.0 184,226 + -1.6 184,226 + +0.2 184,226 + -1.4 184,226 + +0.1 184,226 + +0.8 184,226 + -1.0 184,227 - -1.1 184,227 - +0.4 184,227 - -2.0 184,227 - -0.8 184,227 - -1.2 184,227 - -0.1 184,227 - +1.2 184,227 - -0.8 184,227 - +0.5 184,227 - +0.7 184,227 - -1.9 184,227 - +0.1 184,456 + LRK53_RS00790 0.11 +0.3 184,457 - LRK53_RS00790 0.11 -0.8 184,457 - LRK53_RS00790 0.11 +0.2 184,457 - LRK53_RS00790 0.11 +0.9 184,457 - LRK53_RS00790 0.11 +0.2 184,531 + LRK53_RS00790 0.16 -1.7 184,531 + LRK53_RS00790 0.16 +2.2 184,531 + LRK53_RS00790 0.16 -0.1 184,532 - LRK53_RS00790 0.16 +2.0 184,532 - LRK53_RS00790 0.16 +1.2 184,532 - LRK53_RS00790 0.16 -1.0 184,532 - LRK53_RS00790 0.16 -0.5 184,532 - LRK53_RS00790 0.16 +0.6 184,532 - LRK53_RS00790 0.16 -0.4 184,532 - LRK53_RS00790 0.16 +0.4 184,532 - LRK53_RS00790 0.16 -0.6 184,540 + LRK53_RS00790 0.16 -2.1 184,540 + LRK53_RS00790 0.16 -2.0 184,540 + LRK53_RS00790 0.16 -0.4 184,541 - LRK53_RS00790 0.16 +1.2 184,541 - LRK53_RS00790 0.16 +1.8 184,541 - LRK53_RS00790 0.16 -1.1 184,588 + LRK53_RS00790 0.19 -1.1 184,588 + LRK53_RS00790 0.19 +1.2 184,588 + LRK53_RS00790 0.19 +0.2 184,588 + LRK53_RS00790 0.19 -1.8 184,588 + LRK53_RS00790 0.19 +1.2 184,588 + LRK53_RS00790 0.19 +1.2 184,589 - LRK53_RS00790 0.19 +0.0 184,589 - LRK53_RS00790 0.19 +0.3 184,589 - LRK53_RS00790 0.19 +0.4 184,589 - LRK53_RS00790 0.19 -0.8 184,589 - LRK53_RS00790 0.19 +1.2 184,674 + LRK53_RS00790 0.25 -0.3 184,674 + LRK53_RS00790 0.25 -0.1 184,674 + LRK53_RS00790 0.25 +1.2 184,674 + LRK53_RS00790 0.25 -1.2 184,675 - LRK53_RS00790 0.25 -0.7 184,675 - LRK53_RS00790 0.25 -1.8 184,691 - LRK53_RS00790 0.26 +0.3 184,711 + LRK53_RS00790 0.27 -1.8 184,712 - LRK53_RS00790 0.27 -1.6 184,712 - LRK53_RS00790 0.27 -0.8 184,712 - LRK53_RS00790 0.27 -1.9 184,712 - LRK53_RS00790 0.27 -0.8 184,840 + LRK53_RS00790 0.35 -0.0 184,840 + LRK53_RS00790 0.35 +0.0 184,840 + LRK53_RS00790 0.35 -0.1 184,840 + LRK53_RS00790 0.35 -1.8 184,840 + LRK53_RS00790 0.35 +1.5 184,840 + LRK53_RS00790 0.35 +1.1 184,840 + LRK53_RS00790 0.35 +0.6 184,841 - LRK53_RS00790 0.35 +1.2 184,841 - LRK53_RS00790 0.35 +1.2 184,841 - LRK53_RS00790 0.35 -1.0 184,841 - LRK53_RS00790 0.35 -3.2 184,900 + LRK53_RS00790 0.39 +0.5 184,900 + LRK53_RS00790 0.39 -1.3 184,900 + LRK53_RS00790 0.39 -2.1 184,901 - LRK53_RS00790 0.39 +1.2 184,924 + LRK53_RS00790 0.40 -0.4 184,924 + LRK53_RS00790 0.40 -0.1 184,924 + LRK53_RS00790 0.40 -0.6 184,924 + LRK53_RS00790 0.40 -0.0 184,924 + LRK53_RS00790 0.40 -0.9 184,924 + LRK53_RS00790 0.40 -0.7 184,924 + LRK53_RS00790 0.40 -2.1 184,924 + LRK53_RS00790 0.40 +1.5 184,925 - LRK53_RS00790 0.40 -0.6 184,925 - LRK53_RS00790 0.40 +0.2 184,925 - LRK53_RS00790 0.40 -1.0 184,925 - LRK53_RS00790 0.40 -0.6 184,942 + LRK53_RS00790 0.41 +1.5 184,942 + LRK53_RS00790 0.41 -0.2 184,942 + LRK53_RS00790 0.41 -0.8 184,942 + LRK53_RS00790 0.41 -1.1 184,942 + LRK53_RS00790 0.41 -0.7 184,943 - LRK53_RS00790 0.41 +0.5 184,943 - LRK53_RS00790 0.41 -0.8 184,943 - LRK53_RS00790 0.41 -1.2 185,089 + LRK53_RS00790 0.51 -1.7 185,128 + LRK53_RS00790 0.53 -0.9 185,128 + LRK53_RS00790 0.53 -0.4 185,128 + LRK53_RS00790 0.53 +1.2 185,128 + LRK53_RS00790 0.53 -0.4 185,128 + LRK53_RS00790 0.53 -0.9 185,128 + LRK53_RS00790 0.53 +0.2 185,128 + LRK53_RS00790 0.53 -1.4 185,128 + LRK53_RS00790 0.53 -0.2 185,128 + LRK53_RS00790 0.53 +0.4 185,129 - LRK53_RS00790 0.53 -1.5 185,129 - LRK53_RS00790 0.53 -0.1
Or see this region's nucleotide sequence