Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00755 and LRK53_RS00760 overlap by 4 nucleotides LRK53_RS00760 and LRK53_RS00765 are separated by 29 nucleotides LRK53_RS00765 and LRK53_RS00770 are separated by 72 nucleotides
LRK53_RS00755: LRK53_RS00755 - efflux RND transporter periplasmic adaptor subunit, at 178,708 to 179,817
_RS00755
LRK53_RS00760: LRK53_RS00760 - DUF302 domain-containing protein, at 179,814 to 180,197
_RS00760
LRK53_RS00765: LRK53_RS00765 - DUF2892 domain-containing protein, at 180,227 to 180,433
_RS00765
LRK53_RS00770: LRK53_RS00770 - NAD(P)/FAD-dependent oxidoreductase, at 180,506 to 181,807
_RS00770
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.899 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.426 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.469 kb on - strand, within LRK53_RS00755 at 179.469 kb on - strand, within LRK53_RS00755 at 179.583 kb on - strand, within LRK53_RS00755 at 179.953 kb on + strand, within LRK53_RS00760 at 179.953 kb on + strand, within LRK53_RS00760 at 179.953 kb on + strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.194 kb on + strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.427 kb on + strand at 180.585 kb on + strand at 180.585 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.921 kb on + strand, within LRK53_RS00770 at 180.922 kb on - strand, within LRK53_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 178,899 - LRK53_RS00755 0.17 +0.4 179,307 - LRK53_RS00755 0.54 -0.2 179,307 - LRK53_RS00755 0.54 +2.4 179,307 - LRK53_RS00755 0.54 -1.0 179,307 - LRK53_RS00755 0.54 +0.1 179,307 - LRK53_RS00755 0.54 +0.7 179,307 - LRK53_RS00755 0.54 +0.6 179,414 + LRK53_RS00755 0.64 -1.0 179,414 + LRK53_RS00755 0.64 +1.4 179,414 + LRK53_RS00755 0.64 +0.0 179,414 + LRK53_RS00755 0.64 -2.1 179,415 - LRK53_RS00755 0.64 -0.6 179,415 - LRK53_RS00755 0.64 +0.9 179,415 - LRK53_RS00755 0.64 -0.7 179,415 - LRK53_RS00755 0.64 -0.0 179,426 + LRK53_RS00755 0.65 +1.0 179,468 + LRK53_RS00755 0.68 -2.1 179,469 - LRK53_RS00755 0.69 -0.9 179,469 - LRK53_RS00755 0.69 +1.2 179,583 - LRK53_RS00755 0.79 +1.5 179,953 + LRK53_RS00760 0.36 +2.4 179,953 + LRK53_RS00760 0.36 -0.2 179,953 + LRK53_RS00760 0.36 -0.6 179,954 - LRK53_RS00760 0.36 -1.4 179,954 - LRK53_RS00760 0.36 -2.0 179,954 - LRK53_RS00760 0.36 -0.6 179,954 - LRK53_RS00760 0.36 +0.2 180,190 + +0.4 180,190 + -1.9 180,190 + -0.2 180,190 + -2.1 180,190 + -0.6 180,190 + +1.1 180,190 + -1.0 180,190 + +0.3 180,190 + -0.2 180,190 + -0.6 180,191 - +0.8 180,191 - -0.1 180,191 - -0.4 180,191 - +0.1 180,191 - -0.0 180,191 - +1.2 180,191 - -1.4 180,193 + +1.4 180,193 + -1.3 180,193 + -0.1 180,193 + +2.0 180,193 + +0.0 180,193 + -1.2 180,193 + -1.6 180,193 + -1.2 180,193 + +0.1 180,193 + +0.6 180,193 + +1.5 180,193 + -0.8 180,193 + +1.4 180,193 + -0.6 180,193 + -2.1 180,193 + -0.4 180,193 + -0.6 180,193 + -0.2 180,193 + +0.1 180,193 + -0.2 180,193 + +0.5 180,193 + +1.4 180,193 + -0.5 180,193 + -0.2 180,193 + -0.6 180,193 + +0.3 180,194 + +1.4 180,194 - -0.4 180,194 - -0.6 180,194 - -0.2 180,194 - +2.4 180,194 - +1.4 180,194 - -0.8 180,194 - +1.4 180,194 - +0.4 180,194 - -0.6 180,194 - -1.1 180,194 - +1.4 180,194 - -0.5 180,194 - -0.5 180,194 - -1.2 180,194 - -1.6 180,194 - +0.0 180,194 - +0.8 180,194 - +1.3 180,194 - +1.0 180,194 - -0.6 180,194 - -1.2 180,427 + -1.0 180,585 + -1.8 180,585 + -0.6 180,627 + +0.1 180,627 + -0.6 180,627 + +0.8 180,627 + -0.4 180,627 + -0.2 180,627 + -1.2 180,627 + -1.0 180,627 + -0.2 180,627 + -0.4 180,628 - +0.0 180,628 - -0.5 180,628 - -2.6 180,628 - -0.8 180,628 - -1.0 180,628 - -0.4 180,628 - -0.5 180,628 - -1.6 180,921 + LRK53_RS00770 0.32 -1.2 180,922 - LRK53_RS00770 0.32 -0.6
Or see this region's nucleotide sequence