Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00680 and LRK53_RS00685 are separated by 9 nucleotides LRK53_RS00685 and LRK53_RS00690 are separated by 143 nucleotides
LRK53_RS00680: LRK53_RS00680 - GntR family transcriptional regulator, at 154,501 to 155,253
_RS00680
LRK53_RS00685: LRK53_RS00685 - SIS domain-containing protein, at 155,263 to 156,294
_RS00685
LRK53_RS00690: LRK53_RS00690 - N-acetylglucosamine-6-phosphate deacetylase, at 156,438 to 157,574
_RS00690
Position (kb) 155
156
157 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 154.263 kb on + strand at 154.263 kb on + strand at 154.264 kb on - strand at 154.264 kb on - strand at 154.264 kb on - strand at 154.358 kb on - strand at 154.454 kb on + strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.939 kb on + strand, within LRK53_RS00680 at 155.026 kb on + strand, within LRK53_RS00680 at 155.026 kb on + strand, within LRK53_RS00680 at 155.026 kb on + strand, within LRK53_RS00680 at 155.027 kb on - strand, within LRK53_RS00680 at 155.027 kb on - strand, within LRK53_RS00680 at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.221 kb on + strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.222 kb on - strand at 155.437 kb on + strand, within LRK53_RS00685 at 155.438 kb on - strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.446 kb on + strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.447 kb on - strand, within LRK53_RS00685 at 155.509 kb on + strand, within LRK53_RS00685 at 155.509 kb on + strand, within LRK53_RS00685 at 155.509 kb on + strand, within LRK53_RS00685 at 155.509 kb on + strand, within LRK53_RS00685 at 155.509 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.725 kb on + strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.726 kb on - strand, within LRK53_RS00685 at 155.727 kb on + strand, within LRK53_RS00685 at 155.728 kb on - strand, within LRK53_RS00685 at 155.728 kb on - strand, within LRK53_RS00685 at 155.728 kb on - strand, within LRK53_RS00685 at 156.208 kb on + strand at 156.209 kb on - strand at 156.209 kb on - strand at 156.405 kb on + strand at 156.405 kb on + strand at 156.405 kb on + strand at 156.405 kb on + strand at 156.405 kb on + strand at 156.405 kb on + strand at 156.405 kb on + strand at 156.405 kb on + strand at 156.405 kb on + strand at 157.288 kb on - strand, within LRK53_RS00690 at 157.288 kb on - strand, within LRK53_RS00690
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 154,263 + +0.3 154,263 + +1.1 154,264 - -0.4 154,264 - -0.6 154,264 - -0.6 154,358 - -0.9 154,454 + -2.0 154,570 + -1.0 154,570 + -3.4 154,570 + -2.8 154,570 + -2.2 154,571 - -0.5 154,571 - -0.6 154,571 - -1.0 154,571 - -0.6 154,571 - -1.6 154,571 - -3.7 154,571 - -2.0 154,571 - -1.7 154,571 - -0.6 154,571 - -2.6 154,571 - -1.8 154,571 - -2.0 154,571 - -2.0 154,939 + LRK53_RS00680 0.58 -1.4 155,026 + LRK53_RS00680 0.70 -1.1 155,026 + LRK53_RS00680 0.70 -0.3 155,026 + LRK53_RS00680 0.70 -0.9 155,027 - LRK53_RS00680 0.70 -2.5 155,027 - LRK53_RS00680 0.70 -1.4 155,221 + +0.7 155,221 + -0.3 155,221 + -0.6 155,221 + +0.4 155,221 + +1.8 155,221 + -0.1 155,221 + -1.2 155,221 + -1.8 155,221 + -0.2 155,221 + -1.3 155,221 + -0.9 155,221 + -0.2 155,221 + +0.4 155,221 + -1.4 155,221 + -0.5 155,222 - +0.4 155,222 - -0.6 155,222 - -3.4 155,222 - -4.1 155,222 - -1.1 155,222 - -2.6 155,222 - -2.1 155,222 - -2.0 155,222 - -0.2 155,437 + LRK53_RS00685 0.17 -2.0 155,438 - LRK53_RS00685 0.17 -0.6 155,446 + LRK53_RS00685 0.18 -3.2 155,446 + LRK53_RS00685 0.18 -2.0 155,446 + LRK53_RS00685 0.18 -3.8 155,446 + LRK53_RS00685 0.18 -1.5 155,446 + LRK53_RS00685 0.18 -0.2 155,446 + LRK53_RS00685 0.18 -1.0 155,446 + LRK53_RS00685 0.18 -2.0 155,446 + LRK53_RS00685 0.18 -0.2 155,446 + LRK53_RS00685 0.18 +1.4 155,446 + LRK53_RS00685 0.18 -4.0 155,446 + LRK53_RS00685 0.18 -0.4 155,446 + LRK53_RS00685 0.18 -1.6 155,446 + LRK53_RS00685 0.18 -2.2 155,447 - LRK53_RS00685 0.18 -2.1 155,447 - LRK53_RS00685 0.18 +0.4 155,447 - LRK53_RS00685 0.18 -2.5 155,447 - LRK53_RS00685 0.18 -1.0 155,447 - LRK53_RS00685 0.18 -2.5 155,447 - LRK53_RS00685 0.18 -1.4 155,447 - LRK53_RS00685 0.18 -0.1 155,447 - LRK53_RS00685 0.18 +0.4 155,447 - LRK53_RS00685 0.18 -2.0 155,447 - LRK53_RS00685 0.18 -2.3 155,447 - LRK53_RS00685 0.18 -1.4 155,447 - LRK53_RS00685 0.18 -1.8 155,509 + LRK53_RS00685 0.24 -3.8 155,509 + LRK53_RS00685 0.24 -1.8 155,509 + LRK53_RS00685 0.24 -1.2 155,509 + LRK53_RS00685 0.24 -3.7 155,509 + LRK53_RS00685 0.24 -3.5 155,725 + LRK53_RS00685 0.45 -1.6 155,725 + LRK53_RS00685 0.45 -1.2 155,725 + LRK53_RS00685 0.45 -1.5 155,725 + LRK53_RS00685 0.45 -3.2 155,725 + LRK53_RS00685 0.45 +0.6 155,725 + LRK53_RS00685 0.45 +1.4 155,725 + LRK53_RS00685 0.45 -3.9 155,725 + LRK53_RS00685 0.45 -3.3 155,725 + LRK53_RS00685 0.45 -4.3 155,725 + LRK53_RS00685 0.45 +1.4 155,725 + LRK53_RS00685 0.45 -3.9 155,725 + LRK53_RS00685 0.45 -3.7 155,725 + LRK53_RS00685 0.45 -2.3 155,725 + LRK53_RS00685 0.45 -3.1 155,725 + LRK53_RS00685 0.45 -2.3 155,725 + LRK53_RS00685 0.45 -1.4 155,725 + LRK53_RS00685 0.45 -1.6 155,725 + LRK53_RS00685 0.45 -1.8 155,725 + LRK53_RS00685 0.45 -5.1 155,725 + LRK53_RS00685 0.45 -2.4 155,725 + LRK53_RS00685 0.45 +1.4 155,725 + LRK53_RS00685 0.45 -2.0 155,725 + LRK53_RS00685 0.45 -1.8 155,725 + LRK53_RS00685 0.45 -1.4 155,725 + LRK53_RS00685 0.45 -0.2 155,725 + LRK53_RS00685 0.45 -1.7 155,725 + LRK53_RS00685 0.45 -3.8 155,725 + LRK53_RS00685 0.45 -1.0 155,725 + LRK53_RS00685 0.45 -3.7 155,726 - LRK53_RS00685 0.45 -1.0 155,726 - LRK53_RS00685 0.45 -1.6 155,726 - LRK53_RS00685 0.45 -3.4 155,726 - LRK53_RS00685 0.45 -2.0 155,726 - LRK53_RS00685 0.45 -2.2 155,726 - LRK53_RS00685 0.45 -3.9 155,726 - LRK53_RS00685 0.45 -0.1 155,726 - LRK53_RS00685 0.45 -2.1 155,726 - LRK53_RS00685 0.45 -0.6 155,726 - LRK53_RS00685 0.45 -1.4 155,726 - LRK53_RS00685 0.45 -1.2 155,726 - LRK53_RS00685 0.45 +1.4 155,726 - LRK53_RS00685 0.45 -2.3 155,726 - LRK53_RS00685 0.45 -0.2 155,726 - LRK53_RS00685 0.45 -1.8 155,726 - LRK53_RS00685 0.45 -1.5 155,726 - LRK53_RS00685 0.45 -3.2 155,726 - LRK53_RS00685 0.45 -1.2 155,726 - LRK53_RS00685 0.45 -2.2 155,726 - LRK53_RS00685 0.45 -1.4 155,726 - LRK53_RS00685 0.45 -0.6 155,726 - LRK53_RS00685 0.45 -2.8 155,726 - LRK53_RS00685 0.45 -1.0 155,726 - LRK53_RS00685 0.45 -0.3 155,726 - LRK53_RS00685 0.45 +0.4 155,726 - LRK53_RS00685 0.45 -1.0 155,726 - LRK53_RS00685 0.45 -2.2 155,726 - LRK53_RS00685 0.45 -2.8 155,726 - LRK53_RS00685 0.45 -4.0 155,726 - LRK53_RS00685 0.45 -3.6 155,726 - LRK53_RS00685 0.45 -1.2 155,726 - LRK53_RS00685 0.45 -1.2 155,726 - LRK53_RS00685 0.45 -1.2 155,726 - LRK53_RS00685 0.45 -3.3 155,726 - LRK53_RS00685 0.45 -0.6 155,727 + LRK53_RS00685 0.45 -3.4 155,728 - LRK53_RS00685 0.45 -0.2 155,728 - LRK53_RS00685 0.45 -3.8 155,728 - LRK53_RS00685 0.45 -3.2 156,208 + -2.2 156,209 - -1.7 156,209 - +0.4 156,405 + -0.8 156,405 + -0.4 156,405 + -2.0 156,405 + -1.4 156,405 + -2.3 156,405 + +0.4 156,405 + -0.6 156,405 + +0.8 156,405 + -0.0 157,288 - LRK53_RS00690 0.75 -3.0 157,288 - LRK53_RS00690 0.75 +0.4
Or see this region's nucleotide sequence