Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00680

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00675 and LRK53_RS00680 are separated by 347 nucleotidesLRK53_RS00680 and LRK53_RS00685 are separated by 9 nucleotides LRK53_RS00675: LRK53_RS00675 - glucose-6-phosphate dehydrogenase, at 152,690 to 154,153 _RS00675 LRK53_RS00680: LRK53_RS00680 - GntR family transcriptional regulator, at 154,501 to 155,253 _RS00680 LRK53_RS00685: LRK53_RS00685 - SIS domain-containing protein, at 155,263 to 156,294 _RS00685 Position (kb) 154 155 156Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 154.228 kb on + strandat 154.263 kb on + strandat 154.263 kb on + strandat 154.264 kb on - strandat 154.264 kb on - strandat 154.264 kb on - strandat 154.358 kb on - strandat 154.454 kb on + strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.939 kb on + strand, within LRK53_RS00680at 155.026 kb on + strand, within LRK53_RS00680at 155.026 kb on + strand, within LRK53_RS00680at 155.026 kb on + strand, within LRK53_RS00680at 155.027 kb on - strand, within LRK53_RS00680at 155.027 kb on - strand, within LRK53_RS00680at 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.221 kb on + strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.222 kb on - strandat 155.437 kb on + strand, within LRK53_RS00685at 155.438 kb on - strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.727 kb on + strand, within LRK53_RS00685at 155.728 kb on - strand, within LRK53_RS00685at 155.728 kb on - strand, within LRK53_RS00685at 155.728 kb on - strand, within LRK53_RS00685at 156.208 kb on + strandat 156.209 kb on - strandat 156.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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154,228 + -1.2
154,263 + +0.3
154,263 + +1.1
154,264 - -0.4
154,264 - -0.6
154,264 - -0.6
154,358 - -0.9
154,454 + -2.0
154,570 + -1.0
154,570 + -3.4
154,570 + -2.8
154,570 + -2.2
154,571 - -0.5
154,571 - -0.6
154,571 - -1.0
154,571 - -0.6
154,571 - -1.6
154,571 - -3.7
154,571 - -2.0
154,571 - -1.7
154,571 - -0.6
154,571 - -2.6
154,571 - -1.8
154,571 - -2.0
154,571 - -2.0
154,939 + LRK53_RS00680 0.58 -1.4
155,026 + LRK53_RS00680 0.70 -1.1
155,026 + LRK53_RS00680 0.70 -0.3
155,026 + LRK53_RS00680 0.70 -0.9
155,027 - LRK53_RS00680 0.70 -2.5
155,027 - LRK53_RS00680 0.70 -1.4
155,221 + +0.7
155,221 + -0.3
155,221 + -0.6
155,221 + +0.4
155,221 + +1.8
155,221 + -0.1
155,221 + -1.2
155,221 + -1.8
155,221 + -0.2
155,221 + -1.3
155,221 + -0.9
155,221 + -0.2
155,221 + +0.4
155,221 + -1.4
155,221 + -0.5
155,222 - +0.4
155,222 - -0.6
155,222 - -3.4
155,222 - -4.1
155,222 - -1.1
155,222 - -2.6
155,222 - -2.1
155,222 - -2.0
155,222 - -0.2
155,437 + LRK53_RS00685 0.17 -2.0
155,438 - LRK53_RS00685 0.17 -0.6
155,446 + LRK53_RS00685 0.18 -3.2
155,446 + LRK53_RS00685 0.18 -2.0
155,446 + LRK53_RS00685 0.18 -3.8
155,446 + LRK53_RS00685 0.18 -1.5
155,446 + LRK53_RS00685 0.18 -0.2
155,446 + LRK53_RS00685 0.18 -1.0
155,446 + LRK53_RS00685 0.18 -2.0
155,446 + LRK53_RS00685 0.18 -0.2
155,446 + LRK53_RS00685 0.18 +1.4
155,446 + LRK53_RS00685 0.18 -4.0
155,446 + LRK53_RS00685 0.18 -0.4
155,446 + LRK53_RS00685 0.18 -1.6
155,446 + LRK53_RS00685 0.18 -2.2
155,447 - LRK53_RS00685 0.18 -2.1
155,447 - LRK53_RS00685 0.18 +0.4
155,447 - LRK53_RS00685 0.18 -2.5
155,447 - LRK53_RS00685 0.18 -1.0
155,447 - LRK53_RS00685 0.18 -2.5
155,447 - LRK53_RS00685 0.18 -1.4
155,447 - LRK53_RS00685 0.18 -0.1
155,447 - LRK53_RS00685 0.18 +0.4
155,447 - LRK53_RS00685 0.18 -2.0
155,447 - LRK53_RS00685 0.18 -2.3
155,447 - LRK53_RS00685 0.18 -1.4
155,447 - LRK53_RS00685 0.18 -1.8
155,509 + LRK53_RS00685 0.24 -3.8
155,509 + LRK53_RS00685 0.24 -1.8
155,509 + LRK53_RS00685 0.24 -1.2
155,509 + LRK53_RS00685 0.24 -3.7
155,509 + LRK53_RS00685 0.24 -3.5
155,725 + LRK53_RS00685 0.45 -1.6
155,725 + LRK53_RS00685 0.45 -1.2
155,725 + LRK53_RS00685 0.45 -1.5
155,725 + LRK53_RS00685 0.45 -3.2
155,725 + LRK53_RS00685 0.45 +0.6
155,725 + LRK53_RS00685 0.45 +1.4
155,725 + LRK53_RS00685 0.45 -3.9
155,725 + LRK53_RS00685 0.45 -3.3
155,725 + LRK53_RS00685 0.45 -4.3
155,725 + LRK53_RS00685 0.45 +1.4
155,725 + LRK53_RS00685 0.45 -3.9
155,725 + LRK53_RS00685 0.45 -3.7
155,725 + LRK53_RS00685 0.45 -2.3
155,725 + LRK53_RS00685 0.45 -3.1
155,725 + LRK53_RS00685 0.45 -2.3
155,725 + LRK53_RS00685 0.45 -1.4
155,725 + LRK53_RS00685 0.45 -1.6
155,725 + LRK53_RS00685 0.45 -1.8
155,725 + LRK53_RS00685 0.45 -5.1
155,725 + LRK53_RS00685 0.45 -2.4
155,725 + LRK53_RS00685 0.45 +1.4
155,725 + LRK53_RS00685 0.45 -2.0
155,725 + LRK53_RS00685 0.45 -1.8
155,725 + LRK53_RS00685 0.45 -1.4
155,725 + LRK53_RS00685 0.45 -0.2
155,725 + LRK53_RS00685 0.45 -1.7
155,725 + LRK53_RS00685 0.45 -3.8
155,725 + LRK53_RS00685 0.45 -1.0
155,725 + LRK53_RS00685 0.45 -3.7
155,726 - LRK53_RS00685 0.45 -1.0
155,726 - LRK53_RS00685 0.45 -1.6
155,726 - LRK53_RS00685 0.45 -3.4
155,726 - LRK53_RS00685 0.45 -2.0
155,726 - LRK53_RS00685 0.45 -2.2
155,726 - LRK53_RS00685 0.45 -3.9
155,726 - LRK53_RS00685 0.45 -0.1
155,726 - LRK53_RS00685 0.45 -2.1
155,726 - LRK53_RS00685 0.45 -0.6
155,726 - LRK53_RS00685 0.45 -1.4
155,726 - LRK53_RS00685 0.45 -1.2
155,726 - LRK53_RS00685 0.45 +1.4
155,726 - LRK53_RS00685 0.45 -2.3
155,726 - LRK53_RS00685 0.45 -0.2
155,726 - LRK53_RS00685 0.45 -1.8
155,726 - LRK53_RS00685 0.45 -1.5
155,726 - LRK53_RS00685 0.45 -3.2
155,726 - LRK53_RS00685 0.45 -1.2
155,726 - LRK53_RS00685 0.45 -2.2
155,726 - LRK53_RS00685 0.45 -1.4
155,726 - LRK53_RS00685 0.45 -0.6
155,726 - LRK53_RS00685 0.45 -2.8
155,726 - LRK53_RS00685 0.45 -1.0
155,726 - LRK53_RS00685 0.45 -0.3
155,726 - LRK53_RS00685 0.45 +0.4
155,726 - LRK53_RS00685 0.45 -1.0
155,726 - LRK53_RS00685 0.45 -2.2
155,726 - LRK53_RS00685 0.45 -2.8
155,726 - LRK53_RS00685 0.45 -4.0
155,726 - LRK53_RS00685 0.45 -3.6
155,726 - LRK53_RS00685 0.45 -1.2
155,726 - LRK53_RS00685 0.45 -1.2
155,726 - LRK53_RS00685 0.45 -1.2
155,726 - LRK53_RS00685 0.45 -3.3
155,726 - LRK53_RS00685 0.45 -0.6
155,727 + LRK53_RS00685 0.45 -3.4
155,728 - LRK53_RS00685 0.45 -0.2
155,728 - LRK53_RS00685 0.45 -3.8
155,728 - LRK53_RS00685 0.45 -3.2
156,208 + -2.2
156,209 - -1.7
156,209 - +0.4

Or see this region's nucleotide sequence