Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00395

Experiment: NLDM_defined; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00390 and LRK53_RS00395 are separated by 217 nucleotidesLRK53_RS00395 and LRK53_RS00400 are separated by 287 nucleotides LRK53_RS00390: LRK53_RS00390 - 4,5-DOPA dioxygenase extradiol, at 88,534 to 89,331 _RS00390 LRK53_RS00395: LRK53_RS00395 - SDR family oxidoreductase, at 89,549 to 90,313 _RS00395 LRK53_RS00400: LRK53_RS00400 - amidohydrolase family protein, at 90,601 to 91,839 _RS00400 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2 3at 88.549 kb on - strandat 88.549 kb on - strandat 88.696 kb on + strand, within LRK53_RS00390at 88.696 kb on + strand, within LRK53_RS00390at 88.697 kb on - strand, within LRK53_RS00390at 88.697 kb on - strand, within LRK53_RS00390at 88.697 kb on - strand, within LRK53_RS00390at 88.697 kb on - strand, within LRK53_RS00390at 88.697 kb on - strand, within LRK53_RS00390at 88.787 kb on - strand, within LRK53_RS00390at 88.787 kb on - strand, within LRK53_RS00390at 88.909 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.062 kb on + strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.063 kb on - strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.167 kb on + strand, within LRK53_RS00390at 89.168 kb on - strand, within LRK53_RS00390at 89.218 kb on + strand, within LRK53_RS00390at 89.218 kb on + strand, within LRK53_RS00390at 89.219 kb on - strand, within LRK53_RS00390at 89.219 kb on - strand, within LRK53_RS00390at 89.219 kb on - strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.233 kb on + strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.234 kb on - strand, within LRK53_RS00390at 89.287 kb on - strandat 89.343 kb on + strandat 89.344 kb on - strandat 89.344 kb on - strandat 89.344 kb on - strandat 89.344 kb on - strandat 89.344 kb on - strandat 89.484 kb on + strandat 89.484 kb on + strandat 89.485 kb on - strandat 89.485 kb on - strandat 89.485 kb on - strandat 89.485 kb on - strandat 89.748 kb on - strand, within LRK53_RS00395at 89.748 kb on - strand, within LRK53_RS00395at 89.809 kb on - strand, within LRK53_RS00395at 89.872 kb on - strand, within LRK53_RS00395at 89.872 kb on - strand, within LRK53_RS00395at 89.952 kb on + strand, within LRK53_RS00395at 89.953 kb on - strand, within LRK53_RS00395at 89.953 kb on - strand, within LRK53_RS00395at 89.953 kb on - strand, within LRK53_RS00395at 90.077 kb on + strand, within LRK53_RS00395at 90.077 kb on + strand, within LRK53_RS00395at 90.078 kb on - strand, within LRK53_RS00395at 90.078 kb on - strand, within LRK53_RS00395at 90.385 kb on + strandat 90.385 kb on + strandat 90.386 kb on - strandat 90.386 kb on - strandat 90.386 kb on - strandat 90.386 kb on - strandat 90.386 kb on - strandat 90.641 kb on + strandat 90.641 kb on + strandat 90.642 kb on - strandat 90.792 kb on + strand, within LRK53_RS00400at 90.893 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.095 kb on - strand, within LRK53_RS00400at 91.095 kb on - strand, within LRK53_RS00400at 91.095 kb on - strand, within LRK53_RS00400at 91.262 kb on + strand, within LRK53_RS00400at 91.263 kb on - strand, within LRK53_RS00400

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined; midlog
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88,549 - +0.2
88,549 - +0.4
88,696 + LRK53_RS00390 0.20 +1.1
88,696 + LRK53_RS00390 0.20 -0.0
88,697 - LRK53_RS00390 0.20 -0.6
88,697 - LRK53_RS00390 0.20 +0.1
88,697 - LRK53_RS00390 0.20 -0.2
88,697 - LRK53_RS00390 0.20 +0.1
88,697 - LRK53_RS00390 0.20 +0.4
88,787 - LRK53_RS00390 0.32 +0.4
88,787 - LRK53_RS00390 0.32 +0.3
88,909 + LRK53_RS00390 0.47 -0.6
89,062 + LRK53_RS00390 0.66 +0.4
89,062 + LRK53_RS00390 0.66 +2.4
89,062 + LRK53_RS00390 0.66 +0.1
89,062 + LRK53_RS00390 0.66 -0.7
89,062 + LRK53_RS00390 0.66 -1.0
89,062 + LRK53_RS00390 0.66 +1.3
89,062 + LRK53_RS00390 0.66 -1.2
89,062 + LRK53_RS00390 0.66 +0.1
89,062 + LRK53_RS00390 0.66 +1.1
89,062 + LRK53_RS00390 0.66 +0.4
89,062 + LRK53_RS00390 0.66 +1.7
89,062 + LRK53_RS00390 0.66 -1.4
89,062 + LRK53_RS00390 0.66 +1.2
89,062 + LRK53_RS00390 0.66 -2.0
89,062 + LRK53_RS00390 0.66 -1.4
89,062 + LRK53_RS00390 0.66 +1.1
89,062 + LRK53_RS00390 0.66 +0.4
89,062 + LRK53_RS00390 0.66 -0.9
89,062 + LRK53_RS00390 0.66 -1.4
89,062 + LRK53_RS00390 0.66 +0.8
89,062 + LRK53_RS00390 0.66 -0.7
89,062 + LRK53_RS00390 0.66 -0.2
89,062 + LRK53_RS00390 0.66 -0.8
89,062 + LRK53_RS00390 0.66 -2.1
89,062 + LRK53_RS00390 0.66 +2.4
89,062 + LRK53_RS00390 0.66 +1.0
89,062 + LRK53_RS00390 0.66 -0.5
89,063 - LRK53_RS00390 0.66 -1.8
89,063 - LRK53_RS00390 0.66 -1.0
89,063 - LRK53_RS00390 0.66 -0.5
89,063 - LRK53_RS00390 0.66 -0.3
89,063 - LRK53_RS00390 0.66 -0.6
89,063 - LRK53_RS00390 0.66 -2.7
89,063 - LRK53_RS00390 0.66 +1.4
89,063 - LRK53_RS00390 0.66 +0.2
89,063 - LRK53_RS00390 0.66 +0.0
89,063 - LRK53_RS00390 0.66 +0.8
89,063 - LRK53_RS00390 0.66 -0.6
89,063 - LRK53_RS00390 0.66 +0.0
89,063 - LRK53_RS00390 0.66 +0.4
89,063 - LRK53_RS00390 0.66 -0.4
89,063 - LRK53_RS00390 0.66 -2.2
89,063 - LRK53_RS00390 0.66 +0.6
89,063 - LRK53_RS00390 0.66 +2.1
89,063 - LRK53_RS00390 0.66 +0.6
89,063 - LRK53_RS00390 0.66 +0.4
89,063 - LRK53_RS00390 0.66 +1.4
89,063 - LRK53_RS00390 0.66 -0.8
89,167 + LRK53_RS00390 0.79 -1.9
89,167 + LRK53_RS00390 0.79 +1.9
89,167 + LRK53_RS00390 0.79 -1.2
89,167 + LRK53_RS00390 0.79 -1.8
89,167 + LRK53_RS00390 0.79 -0.1
89,167 + LRK53_RS00390 0.79 +1.4
89,167 + LRK53_RS00390 0.79 -1.9
89,167 + LRK53_RS00390 0.79 +0.4
89,167 + LRK53_RS00390 0.79 -0.4
89,168 - LRK53_RS00390 0.79 +3.4
89,218 + LRK53_RS00390 0.86 -2.7
89,218 + LRK53_RS00390 0.86 +0.6
89,219 - LRK53_RS00390 0.86 +0.6
89,219 - LRK53_RS00390 0.86 +0.4
89,219 - LRK53_RS00390 0.86 -1.6
89,233 + LRK53_RS00390 0.88 +1.9
89,233 + LRK53_RS00390 0.88 -0.6
89,233 + LRK53_RS00390 0.88 -2.6
89,233 + LRK53_RS00390 0.88 -0.2
89,233 + LRK53_RS00390 0.88 -1.0
89,233 + LRK53_RS00390 0.88 -0.6
89,233 + LRK53_RS00390 0.88 -0.1
89,233 + LRK53_RS00390 0.88 +1.4
89,233 + LRK53_RS00390 0.88 -2.0
89,234 - LRK53_RS00390 0.88 +0.4
89,234 - LRK53_RS00390 0.88 -0.2
89,234 - LRK53_RS00390 0.88 -2.0
89,234 - LRK53_RS00390 0.88 +0.6
89,234 - LRK53_RS00390 0.88 -0.8
89,234 - LRK53_RS00390 0.88 +2.4
89,234 - LRK53_RS00390 0.88 -0.2
89,234 - LRK53_RS00390 0.88 -0.6
89,234 - LRK53_RS00390 0.88 +1.0
89,234 - LRK53_RS00390 0.88 +0.6
89,234 - LRK53_RS00390 0.88 +0.4
89,234 - LRK53_RS00390 0.88 -1.6
89,234 - LRK53_RS00390 0.88 +0.2
89,287 - -1.5
89,343 + -0.2
89,344 - +1.0
89,344 - +0.6
89,344 - +1.4
89,344 - +1.2
89,344 - +0.1
89,484 + +1.8
89,484 + +1.8
89,485 - +0.4
89,485 - -1.0
89,485 - +0.4
89,485 - -0.2
89,748 - LRK53_RS00395 0.26 +0.4
89,748 - LRK53_RS00395 0.26 +0.4
89,809 - LRK53_RS00395 0.34 -0.2
89,872 - LRK53_RS00395 0.42 -1.2
89,872 - LRK53_RS00395 0.42 -0.5
89,952 + LRK53_RS00395 0.53 -0.2
89,953 - LRK53_RS00395 0.53 +1.4
89,953 - LRK53_RS00395 0.53 +0.1
89,953 - LRK53_RS00395 0.53 -2.7
90,077 + LRK53_RS00395 0.69 -0.2
90,077 + LRK53_RS00395 0.69 -1.0
90,078 - LRK53_RS00395 0.69 +0.8
90,078 - LRK53_RS00395 0.69 -2.0
90,385 + +0.4
90,385 + -2.4
90,386 - -0.2
90,386 - +0.3
90,386 - -0.5
90,386 - +0.0
90,386 - -0.9
90,641 + -1.0
90,641 + -0.6
90,642 - +0.4
90,792 + LRK53_RS00400 0.15 +1.4
90,893 + LRK53_RS00400 0.24 -1.6
91,094 + LRK53_RS00400 0.40 +0.6
91,094 + LRK53_RS00400 0.40 +0.4
91,094 + LRK53_RS00400 0.40 -1.2
91,094 + LRK53_RS00400 0.40 -0.2
91,095 - LRK53_RS00400 0.40 +0.1
91,095 - LRK53_RS00400 0.40 -0.2
91,095 - LRK53_RS00400 0.40 +0.5
91,262 + LRK53_RS00400 0.53 -0.0
91,263 - LRK53_RS00400 0.53 -0.2

Or see this region's nucleotide sequence