Experiment: NLDM_defined; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00115 and LRK53_RS00120 overlap by 4 nucleotides LRK53_RS00120 and LRK53_RS00125 are separated by 1 nucleotides LRK53_RS00125 and LRK53_RS00130 are separated by 92 nucleotides
LRK53_RS00115: LRK53_RS00115 - hypothetical protein, at 33,057 to 34,532
_RS00115
LRK53_RS00120: LRK53_RS00120 - ABC transporter ATP-binding protein, at 34,529 to 35,422
_RS00120
LRK53_RS00125: LRK53_RS00125 - GntR family transcriptional regulator, at 35,424 to 35,807
_RS00125
LRK53_RS00130: LRK53_RS00130 - S9 family peptidase, at 35,900 to 37,972
_RS00130
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 33.673 kb on + strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.766 kb on + strand, within LRK53_RS00115 at 33.766 kb on + strand, within LRK53_RS00115 at 33.766 kb on + strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.895 kb on + strand, within LRK53_RS00115 at 33.895 kb on + strand, within LRK53_RS00115 at 33.916 kb on + strand, within LRK53_RS00115 at 33.965 kb on + strand, within LRK53_RS00115 at 33.965 kb on + strand, within LRK53_RS00115 at 33.966 kb on - strand, within LRK53_RS00115 at 33.966 kb on - strand, within LRK53_RS00115 at 33.966 kb on - strand, within LRK53_RS00115 at 34.126 kb on + strand, within LRK53_RS00115 at 34.126 kb on + strand, within LRK53_RS00115 at 34.126 kb on + strand, within LRK53_RS00115 at 34.126 kb on + strand, within LRK53_RS00115 at 34.127 kb on - strand, within LRK53_RS00115 at 34.252 kb on + strand, within LRK53_RS00115 at 34.252 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.375 kb on + strand, within LRK53_RS00115 at 34.376 kb on - strand, within LRK53_RS00115 at 34.376 kb on - strand, within LRK53_RS00115 at 34.376 kb on - strand, within LRK53_RS00115 at 34.376 kb on - strand, within LRK53_RS00115 at 34.521 kb on + strand at 34.522 kb on - strand at 34.728 kb on + strand, within LRK53_RS00120 at 34.825 kb on + strand, within LRK53_RS00120 at 34.825 kb on + strand, within LRK53_RS00120 at 34.826 kb on - strand, within LRK53_RS00120 at 34.826 kb on - strand, within LRK53_RS00120 at 34.826 kb on - strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.152 kb on - strand, within LRK53_RS00120 at 35.204 kb on + strand, within LRK53_RS00120 at 35.303 kb on - strand, within LRK53_RS00120 at 35.352 kb on + strand at 35.353 kb on - strand at 35.353 kb on - strand at 35.353 kb on - strand at 35.630 kb on - strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.812 kb on - strand at 35.825 kb on + strand at 35.826 kb on - strand at 35.919 kb on + strand at 35.920 kb on - strand at 35.920 kb on - strand at 35.920 kb on - strand at 36.153 kb on + strand, within LRK53_RS00130 at 36.154 kb on - strand, within LRK53_RS00130 at 36.171 kb on + strand, within LRK53_RS00130 at 36.171 kb on + strand, within LRK53_RS00130 at 36.172 kb on - strand, within LRK53_RS00130 at 36.172 kb on - strand, within LRK53_RS00130 at 36.226 kb on - strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.318 kb on + strand, within LRK53_RS00130 at 36.318 kb on + strand, within LRK53_RS00130 at 36.318 kb on + strand, within LRK53_RS00130 at 36.319 kb on - strand, within LRK53_RS00130 at 36.319 kb on - strand, within LRK53_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined; midlog remove 33,673 + LRK53_RS00115 0.42 -1.0 33,743 - LRK53_RS00115 0.46 -1.6 33,743 - LRK53_RS00115 0.46 -1.3 33,743 - LRK53_RS00115 0.46 +0.0 33,743 - LRK53_RS00115 0.46 -2.1 33,766 + LRK53_RS00115 0.48 -2.5 33,766 + LRK53_RS00115 0.48 +0.9 33,766 + LRK53_RS00115 0.48 -0.6 33,767 - LRK53_RS00115 0.48 -1.1 33,767 - LRK53_RS00115 0.48 -1.0 33,767 - LRK53_RS00115 0.48 -2.0 33,767 - LRK53_RS00115 0.48 +1.5 33,767 - LRK53_RS00115 0.48 -0.8 33,767 - LRK53_RS00115 0.48 -1.8 33,767 - LRK53_RS00115 0.48 -0.4 33,895 + LRK53_RS00115 0.57 -2.1 33,895 + LRK53_RS00115 0.57 -0.3 33,916 + LRK53_RS00115 0.58 -2.0 33,965 + LRK53_RS00115 0.62 -0.5 33,965 + LRK53_RS00115 0.62 +1.2 33,966 - LRK53_RS00115 0.62 -1.8 33,966 - LRK53_RS00115 0.62 -1.2 33,966 - LRK53_RS00115 0.62 +0.7 34,126 + LRK53_RS00115 0.72 -0.8 34,126 + LRK53_RS00115 0.72 -0.4 34,126 + LRK53_RS00115 0.72 -0.9 34,126 + LRK53_RS00115 0.72 -0.4 34,127 - LRK53_RS00115 0.72 +0.2 34,252 + LRK53_RS00115 0.81 -0.4 34,252 + LRK53_RS00115 0.81 -0.8 34,375 + LRK53_RS00115 0.89 -0.4 34,375 + LRK53_RS00115 0.89 -0.8 34,375 + LRK53_RS00115 0.89 -1.1 34,375 + LRK53_RS00115 0.89 +2.2 34,375 + LRK53_RS00115 0.89 -2.4 34,375 + LRK53_RS00115 0.89 +0.9 34,375 + LRK53_RS00115 0.89 +0.4 34,375 + LRK53_RS00115 0.89 +0.4 34,376 - LRK53_RS00115 0.89 -0.8 34,376 - LRK53_RS00115 0.89 +1.2 34,376 - LRK53_RS00115 0.89 -0.8 34,376 - LRK53_RS00115 0.89 +2.8 34,521 + -1.4 34,522 - -1.5 34,728 + LRK53_RS00120 0.22 +0.1 34,825 + LRK53_RS00120 0.33 -0.4 34,825 + LRK53_RS00120 0.33 -0.2 34,826 - LRK53_RS00120 0.33 +3.2 34,826 - LRK53_RS00120 0.33 +0.4 34,826 - LRK53_RS00120 0.33 -1.1 35,047 + LRK53_RS00120 0.58 +0.3 35,047 + LRK53_RS00120 0.58 -0.4 35,047 + LRK53_RS00120 0.58 +1.2 35,047 + LRK53_RS00120 0.58 -0.1 35,047 + LRK53_RS00120 0.58 +0.4 35,047 + LRK53_RS00120 0.58 -1.8 35,047 + LRK53_RS00120 0.58 +0.2 35,047 + LRK53_RS00120 0.58 -0.2 35,048 - LRK53_RS00120 0.58 +2.2 35,048 - LRK53_RS00120 0.58 -1.7 35,048 - LRK53_RS00120 0.58 -0.8 35,048 - LRK53_RS00120 0.58 +0.8 35,048 - LRK53_RS00120 0.58 +0.8 35,048 - LRK53_RS00120 0.58 +0.9 35,151 + LRK53_RS00120 0.70 -1.0 35,151 + LRK53_RS00120 0.70 +0.8 35,151 + LRK53_RS00120 0.70 -0.3 35,151 + LRK53_RS00120 0.70 -0.6 35,152 - LRK53_RS00120 0.70 -0.1 35,204 + LRK53_RS00120 0.76 -1.1 35,303 - LRK53_RS00120 0.87 +0.1 35,352 + +1.2 35,353 - +0.8 35,353 - -1.9 35,353 - -2.5 35,630 - LRK53_RS00125 0.54 -1.0 35,758 + LRK53_RS00125 0.87 -0.1 35,758 + LRK53_RS00125 0.87 -0.8 35,758 + LRK53_RS00125 0.87 +1.2 35,758 + LRK53_RS00125 0.87 -0.5 35,759 - LRK53_RS00125 0.87 -0.7 35,759 - LRK53_RS00125 0.87 -0.5 35,759 - LRK53_RS00125 0.87 +0.9 35,759 - LRK53_RS00125 0.87 -1.0 35,784 + +0.2 35,784 + -0.6 35,784 + -0.2 35,784 + -1.7 35,784 + -1.8 35,784 + -0.4 35,784 + +2.2 35,784 + -1.6 35,784 + -2.4 35,784 + -1.4 35,784 + -2.0 35,784 + +1.2 35,784 + -1.3 35,784 + -0.6 35,784 + -2.2 35,784 + +0.2 35,784 + -0.2 35,784 + +0.2 35,784 + -2.0 35,784 + -0.6 35,784 + -1.0 35,784 + +1.2 35,784 + +0.0 35,784 + -0.7 35,784 + -0.2 35,784 + -0.2 35,784 + -0.8 35,784 + -0.1 35,784 + +1.2 35,784 + +1.2 35,784 + -0.1 35,784 + -0.7 35,784 + -0.6 35,784 + +0.2 35,784 + +0.1 35,784 + -1.2 35,784 + -2.9 35,784 + +0.4 35,784 + -1.7 35,784 + -0.0 35,784 + +2.3 35,784 + +1.6 35,784 + -0.8 35,784 + -0.2 35,784 + -0.1 35,784 + -0.1 35,784 + -1.0 35,785 - -0.1 35,785 - -1.6 35,785 - +1.2 35,785 - -1.1 35,785 - +0.2 35,785 - -0.4 35,785 - -1.8 35,785 - -0.8 35,785 - -0.8 35,785 - -0.1 35,785 - +1.5 35,785 - +0.2 35,785 - +0.0 35,785 - +0.2 35,785 - -0.7 35,785 - -0.4 35,785 - -2.0 35,785 - -0.8 35,785 - +0.2 35,785 - -0.8 35,785 - -1.3 35,785 - -1.1 35,785 - +0.6 35,785 - +1.2 35,785 - +0.3 35,785 - -0.8 35,785 - -0.2 35,785 - -0.5 35,785 - -0.0 35,785 - +0.7 35,785 - +0.2 35,785 - +0.1 35,785 - +1.1 35,785 - +3.2 35,785 - +0.2 35,785 - -0.4 35,785 - -1.5 35,785 - -0.4 35,785 - -1.5 35,785 - +1.9 35,785 - -0.1 35,785 - +1.2 35,785 - +0.2 35,785 - -0.7 35,785 - -0.8 35,785 - +0.1 35,785 - -2.2 35,785 - -2.9 35,785 - +0.1 35,812 - +2.5 35,825 + +0.2 35,826 - -0.9 35,919 + -1.9 35,920 - -2.2 35,920 - +1.6 35,920 - -1.6 36,153 + LRK53_RS00130 0.12 -0.1 36,154 - LRK53_RS00130 0.12 +0.3 36,171 + LRK53_RS00130 0.13 -0.9 36,171 + LRK53_RS00130 0.13 -0.5 36,172 - LRK53_RS00130 0.13 +0.0 36,172 - LRK53_RS00130 0.13 -1.1 36,226 - LRK53_RS00130 0.16 -0.4 36,228 + LRK53_RS00130 0.16 -0.0 36,228 + LRK53_RS00130 0.16 +0.9 36,228 + LRK53_RS00130 0.16 +1.2 36,228 + LRK53_RS00130 0.16 +0.2 36,228 + LRK53_RS00130 0.16 +1.2 36,228 + LRK53_RS00130 0.16 -0.9 36,228 + LRK53_RS00130 0.16 +1.1 36,228 + LRK53_RS00130 0.16 -1.8 36,228 + LRK53_RS00130 0.16 -1.1 36,228 + LRK53_RS00130 0.16 -2.0 36,229 - LRK53_RS00130 0.16 -0.8 36,229 - LRK53_RS00130 0.16 +0.4 36,229 - LRK53_RS00130 0.16 +0.8 36,229 - LRK53_RS00130 0.16 +0.6 36,229 - LRK53_RS00130 0.16 -1.8 36,229 - LRK53_RS00130 0.16 +0.8 36,229 - LRK53_RS00130 0.16 +1.0 36,229 - LRK53_RS00130 0.16 -0.8 36,229 - LRK53_RS00130 0.16 -0.3 36,318 + LRK53_RS00130 0.20 -0.4 36,318 + LRK53_RS00130 0.20 -0.5 36,318 + LRK53_RS00130 0.20 +0.9 36,319 - LRK53_RS00130 0.20 -0.2 36,319 - LRK53_RS00130 0.20 -0.6
Or see this region's nucleotide sequence