Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13230

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13225 and LRK53_RS13230 overlap by 4 nucleotidesLRK53_RS13230 and LRK53_RS13235 are separated by 226 nucleotides LRK53_RS13225: LRK53_RS13225 - FUSC family protein, at 2,913,100 to 2,914,215 _RS13225 LRK53_RS13230: LRK53_RS13230 - hypothetical protein, at 2,914,212 to 2,914,550 _RS13230 LRK53_RS13235: LRK53_RS13235 - MFS transporter, at 2,914,777 to 2,916,258 _RS13235 Position (kb) 2914 2915Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2913.234 kb on + strand, within LRK53_RS13225at 2913.235 kb on - strand, within LRK53_RS13225at 2913.235 kb on - strand, within LRK53_RS13225at 2913.344 kb on + strand, within LRK53_RS13225at 2913.344 kb on + strand, within LRK53_RS13225at 2913.549 kb on - strand, within LRK53_RS13225at 2913.632 kb on + strand, within LRK53_RS13225at 2913.632 kb on + strand, within LRK53_RS13225at 2913.633 kb on - strand, within LRK53_RS13225at 2913.701 kb on + strand, within LRK53_RS13225at 2913.789 kb on - strand, within LRK53_RS13225at 2913.845 kb on + strand, within LRK53_RS13225at 2913.848 kb on + strand, within LRK53_RS13225at 2913.849 kb on - strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.989 kb on + strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2913.990 kb on - strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.010 kb on + strand, within LRK53_RS13225at 2914.011 kb on - strand, within LRK53_RS13225at 2914.011 kb on - strand, within LRK53_RS13225at 2914.011 kb on - strand, within LRK53_RS13225at 2914.011 kb on - strand, within LRK53_RS13225at 2914.011 kb on - strand, within LRK53_RS13225at 2914.011 kb on - strand, within LRK53_RS13225at 2914.049 kb on + strand, within LRK53_RS13225at 2914.067 kb on + strand, within LRK53_RS13225at 2914.067 kb on + strand, within LRK53_RS13225at 2914.067 kb on + strand, within LRK53_RS13225at 2914.067 kb on + strand, within LRK53_RS13225at 2914.068 kb on - strand, within LRK53_RS13225at 2914.068 kb on - strand, within LRK53_RS13225at 2914.068 kb on - strand, within LRK53_RS13225at 2914.068 kb on - strand, within LRK53_RS13225at 2914.068 kb on - strand, within LRK53_RS13225at 2914.068 kb on - strand, within LRK53_RS13225at 2914.068 kb on - strand, within LRK53_RS13225at 2914.354 kb on + strand, within LRK53_RS13230at 2914.354 kb on + strand, within LRK53_RS13230at 2914.354 kb on + strand, within LRK53_RS13230at 2914.354 kb on + strand, within LRK53_RS13230at 2914.354 kb on + strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.355 kb on - strand, within LRK53_RS13230at 2914.369 kb on - strand, within LRK53_RS13230at 2915.024 kb on + strand, within LRK53_RS13235at 2915.024 kb on + strand, within LRK53_RS13235at 2915.024 kb on + strand, within LRK53_RS13235at 2915.024 kb on + strand, within LRK53_RS13235at 2915.024 kb on + strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.025 kb on - strand, within LRK53_RS13235at 2915.096 kb on + strand, within LRK53_RS13235at 2915.096 kb on + strand, within LRK53_RS13235at 2915.096 kb on + strand, within LRK53_RS13235at 2915.097 kb on - strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.150 kb on + strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.151 kb on - strand, within LRK53_RS13235at 2915.295 kb on - strand, within LRK53_RS13235at 2915.421 kb on - strand, within LRK53_RS13235at 2915.421 kb on - strand, within LRK53_RS13235at 2915.421 kb on - strand, within LRK53_RS13235at 2915.421 kb on - strand, within LRK53_RS13235at 2915.421 kb on - strand, within LRK53_RS13235at 2915.421 kb on - strand, within LRK53_RS13235at 2915.421 kb on - strand, within LRK53_RS13235at 2915.500 kb on + strand, within LRK53_RS13235at 2915.501 kb on - strand, within LRK53_RS13235at 2915.501 kb on - strand, within LRK53_RS13235

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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2,913,234 + LRK53_RS13225 0.12 -1.6
2,913,235 - LRK53_RS13225 0.12 -0.2
2,913,235 - LRK53_RS13225 0.12 +1.0
2,913,344 + LRK53_RS13225 0.22 -2.6
2,913,344 + LRK53_RS13225 0.22 -0.7
2,913,549 - LRK53_RS13225 0.40 -0.6
2,913,632 + LRK53_RS13225 0.48 +0.3
2,913,632 + LRK53_RS13225 0.48 -1.4
2,913,633 - LRK53_RS13225 0.48 -0.6
2,913,701 + LRK53_RS13225 0.54 -1.9
2,913,789 - LRK53_RS13225 0.62 +1.4
2,913,845 + LRK53_RS13225 0.67 -0.8
2,913,848 + LRK53_RS13225 0.67 -0.6
2,913,849 - LRK53_RS13225 0.67 -0.3
2,913,989 + LRK53_RS13225 0.80 -1.2
2,913,989 + LRK53_RS13225 0.80 -0.3
2,913,989 + LRK53_RS13225 0.80 -1.0
2,913,989 + LRK53_RS13225 0.80 -1.4
2,913,989 + LRK53_RS13225 0.80 +0.1
2,913,989 + LRK53_RS13225 0.80 +1.0
2,913,989 + LRK53_RS13225 0.80 -0.0
2,913,989 + LRK53_RS13225 0.80 -1.4
2,913,989 + LRK53_RS13225 0.80 -1.6
2,913,989 + LRK53_RS13225 0.80 -0.2
2,913,990 - LRK53_RS13225 0.80 -0.2
2,913,990 - LRK53_RS13225 0.80 -1.2
2,913,990 - LRK53_RS13225 0.80 -0.9
2,913,990 - LRK53_RS13225 0.80 -0.6
2,913,990 - LRK53_RS13225 0.80 -0.1
2,913,990 - LRK53_RS13225 0.80 -0.7
2,913,990 - LRK53_RS13225 0.80 -1.4
2,913,990 - LRK53_RS13225 0.80 -0.2
2,914,010 + LRK53_RS13225 0.82 +0.5
2,914,010 + LRK53_RS13225 0.82 -0.4
2,914,010 + LRK53_RS13225 0.82 +1.0
2,914,010 + LRK53_RS13225 0.82 -1.0
2,914,010 + LRK53_RS13225 0.82 +0.1
2,914,010 + LRK53_RS13225 0.82 +1.2
2,914,010 + LRK53_RS13225 0.82 -0.8
2,914,010 + LRK53_RS13225 0.82 -0.9
2,914,011 - LRK53_RS13225 0.82 -0.6
2,914,011 - LRK53_RS13225 0.82 -1.0
2,914,011 - LRK53_RS13225 0.82 -2.0
2,914,011 - LRK53_RS13225 0.82 -0.0
2,914,011 - LRK53_RS13225 0.82 -1.3
2,914,011 - LRK53_RS13225 0.82 -0.6
2,914,049 + LRK53_RS13225 0.85 +0.4
2,914,067 + LRK53_RS13225 0.87 -0.1
2,914,067 + LRK53_RS13225 0.87 -0.3
2,914,067 + LRK53_RS13225 0.87 +0.5
2,914,067 + LRK53_RS13225 0.87 -1.9
2,914,068 - LRK53_RS13225 0.87 +1.5
2,914,068 - LRK53_RS13225 0.87 +1.9
2,914,068 - LRK53_RS13225 0.87 -1.9
2,914,068 - LRK53_RS13225 0.87 +0.7
2,914,068 - LRK53_RS13225 0.87 -2.1
2,914,068 - LRK53_RS13225 0.87 +1.4
2,914,068 - LRK53_RS13225 0.87 -0.1
2,914,354 + LRK53_RS13230 0.42 -0.4
2,914,354 + LRK53_RS13230 0.42 -0.0
2,914,354 + LRK53_RS13230 0.42 +1.9
2,914,354 + LRK53_RS13230 0.42 +0.4
2,914,354 + LRK53_RS13230 0.42 -2.0
2,914,355 - LRK53_RS13230 0.42 +2.5
2,914,355 - LRK53_RS13230 0.42 +0.5
2,914,355 - LRK53_RS13230 0.42 -0.4
2,914,355 - LRK53_RS13230 0.42 +0.4
2,914,355 - LRK53_RS13230 0.42 -0.1
2,914,355 - LRK53_RS13230 0.42 -0.4
2,914,355 - LRK53_RS13230 0.42 -0.4
2,914,355 - LRK53_RS13230 0.42 +0.2
2,914,369 - LRK53_RS13230 0.46 -1.6
2,915,024 + LRK53_RS13235 0.17 -2.5
2,915,024 + LRK53_RS13235 0.17 -1.9
2,915,024 + LRK53_RS13235 0.17 -1.5
2,915,024 + LRK53_RS13235 0.17 +0.5
2,915,024 + LRK53_RS13235 0.17 -0.1
2,915,025 - LRK53_RS13235 0.17 -2.7
2,915,025 - LRK53_RS13235 0.17 +1.3
2,915,025 - LRK53_RS13235 0.17 +1.9
2,915,025 - LRK53_RS13235 0.17 -1.3
2,915,025 - LRK53_RS13235 0.17 -0.1
2,915,025 - LRK53_RS13235 0.17 +0.9
2,915,025 - LRK53_RS13235 0.17 -0.1
2,915,025 - LRK53_RS13235 0.17 +0.2
2,915,025 - LRK53_RS13235 0.17 -1.1
2,915,025 - LRK53_RS13235 0.17 -0.1
2,915,025 - LRK53_RS13235 0.17 +0.7
2,915,025 - LRK53_RS13235 0.17 -0.6
2,915,096 + LRK53_RS13235 0.22 -1.1
2,915,096 + LRK53_RS13235 0.22 +0.6
2,915,096 + LRK53_RS13235 0.22 -0.6
2,915,097 - LRK53_RS13235 0.22 +1.7
2,915,150 + LRK53_RS13235 0.25 -0.4
2,915,150 + LRK53_RS13235 0.25 +0.9
2,915,150 + LRK53_RS13235 0.25 -2.5
2,915,150 + LRK53_RS13235 0.25 +0.9
2,915,150 + LRK53_RS13235 0.25 -2.5
2,915,150 + LRK53_RS13235 0.25 +0.9
2,915,150 + LRK53_RS13235 0.25 -0.7
2,915,150 + LRK53_RS13235 0.25 +0.6
2,915,151 - LRK53_RS13235 0.25 +1.4
2,915,151 - LRK53_RS13235 0.25 -2.6
2,915,151 - LRK53_RS13235 0.25 +1.3
2,915,151 - LRK53_RS13235 0.25 -2.8
2,915,151 - LRK53_RS13235 0.25 -0.1
2,915,151 - LRK53_RS13235 0.25 -0.5
2,915,151 - LRK53_RS13235 0.25 -0.3
2,915,151 - LRK53_RS13235 0.25 +0.9
2,915,295 - LRK53_RS13235 0.35 +0.9
2,915,421 - LRK53_RS13235 0.43 -0.7
2,915,421 - LRK53_RS13235 0.43 +0.9
2,915,421 - LRK53_RS13235 0.43 +0.5
2,915,421 - LRK53_RS13235 0.43 +1.4
2,915,421 - LRK53_RS13235 0.43 +0.5
2,915,421 - LRK53_RS13235 0.43 -2.9
2,915,421 - LRK53_RS13235 0.43 -0.1
2,915,500 + LRK53_RS13235 0.49 -0.5
2,915,501 - LRK53_RS13235 0.49 -0.6
2,915,501 - LRK53_RS13235 0.49 -0.0

Or see this region's nucleotide sequence