Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13225 and LRK53_RS13230 overlap by 4 nucleotides LRK53_RS13230 and LRK53_RS13235 are separated by 226 nucleotides
LRK53_RS13225: LRK53_RS13225 - FUSC family protein, at 2,913,100 to 2,914,215
_RS13225
LRK53_RS13230: LRK53_RS13230 - hypothetical protein, at 2,914,212 to 2,914,550
_RS13230
LRK53_RS13235: LRK53_RS13235 - MFS transporter, at 2,914,777 to 2,916,258
_RS13235
Position (kb)
2914
2915 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2913.234 kb on + strand, within LRK53_RS13225 at 2913.235 kb on - strand, within LRK53_RS13225 at 2913.235 kb on - strand, within LRK53_RS13225 at 2913.344 kb on + strand, within LRK53_RS13225 at 2913.344 kb on + strand, within LRK53_RS13225 at 2913.549 kb on - strand, within LRK53_RS13225 at 2913.632 kb on + strand, within LRK53_RS13225 at 2913.632 kb on + strand, within LRK53_RS13225 at 2913.633 kb on - strand, within LRK53_RS13225 at 2913.701 kb on + strand, within LRK53_RS13225 at 2913.789 kb on - strand, within LRK53_RS13225 at 2913.845 kb on + strand, within LRK53_RS13225 at 2913.848 kb on + strand, within LRK53_RS13225 at 2913.849 kb on - strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.989 kb on + strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2913.990 kb on - strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.010 kb on + strand, within LRK53_RS13225 at 2914.011 kb on - strand, within LRK53_RS13225 at 2914.011 kb on - strand, within LRK53_RS13225 at 2914.011 kb on - strand, within LRK53_RS13225 at 2914.011 kb on - strand, within LRK53_RS13225 at 2914.011 kb on - strand, within LRK53_RS13225 at 2914.011 kb on - strand, within LRK53_RS13225 at 2914.049 kb on + strand, within LRK53_RS13225 at 2914.067 kb on + strand, within LRK53_RS13225 at 2914.067 kb on + strand, within LRK53_RS13225 at 2914.067 kb on + strand, within LRK53_RS13225 at 2914.067 kb on + strand, within LRK53_RS13225 at 2914.068 kb on - strand, within LRK53_RS13225 at 2914.068 kb on - strand, within LRK53_RS13225 at 2914.068 kb on - strand, within LRK53_RS13225 at 2914.068 kb on - strand, within LRK53_RS13225 at 2914.068 kb on - strand, within LRK53_RS13225 at 2914.068 kb on - strand, within LRK53_RS13225 at 2914.068 kb on - strand, within LRK53_RS13225 at 2914.354 kb on + strand, within LRK53_RS13230 at 2914.354 kb on + strand, within LRK53_RS13230 at 2914.354 kb on + strand, within LRK53_RS13230 at 2914.354 kb on + strand, within LRK53_RS13230 at 2914.354 kb on + strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.355 kb on - strand, within LRK53_RS13230 at 2914.369 kb on - strand, within LRK53_RS13230 at 2915.024 kb on + strand, within LRK53_RS13235 at 2915.024 kb on + strand, within LRK53_RS13235 at 2915.024 kb on + strand, within LRK53_RS13235 at 2915.024 kb on + strand, within LRK53_RS13235 at 2915.024 kb on + strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.025 kb on - strand, within LRK53_RS13235 at 2915.096 kb on + strand, within LRK53_RS13235 at 2915.096 kb on + strand, within LRK53_RS13235 at 2915.096 kb on + strand, within LRK53_RS13235 at 2915.097 kb on - strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.150 kb on + strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.151 kb on - strand, within LRK53_RS13235 at 2915.295 kb on - strand, within LRK53_RS13235 at 2915.421 kb on - strand, within LRK53_RS13235 at 2915.421 kb on - strand, within LRK53_RS13235 at 2915.421 kb on - strand, within LRK53_RS13235 at 2915.421 kb on - strand, within LRK53_RS13235 at 2915.421 kb on - strand, within LRK53_RS13235 at 2915.421 kb on - strand, within LRK53_RS13235 at 2915.421 kb on - strand, within LRK53_RS13235 at 2915.500 kb on + strand, within LRK53_RS13235 at 2915.501 kb on - strand, within LRK53_RS13235 at 2915.501 kb on - strand, within LRK53_RS13235
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 2,913,234 + LRK53_RS13225 0.12 -1.6 2,913,235 - LRK53_RS13225 0.12 -0.2 2,913,235 - LRK53_RS13225 0.12 +1.0 2,913,344 + LRK53_RS13225 0.22 -2.6 2,913,344 + LRK53_RS13225 0.22 -0.7 2,913,549 - LRK53_RS13225 0.40 -0.6 2,913,632 + LRK53_RS13225 0.48 +0.3 2,913,632 + LRK53_RS13225 0.48 -1.4 2,913,633 - LRK53_RS13225 0.48 -0.6 2,913,701 + LRK53_RS13225 0.54 -1.9 2,913,789 - LRK53_RS13225 0.62 +1.4 2,913,845 + LRK53_RS13225 0.67 -0.8 2,913,848 + LRK53_RS13225 0.67 -0.6 2,913,849 - LRK53_RS13225 0.67 -0.3 2,913,989 + LRK53_RS13225 0.80 -1.2 2,913,989 + LRK53_RS13225 0.80 -0.3 2,913,989 + LRK53_RS13225 0.80 -1.0 2,913,989 + LRK53_RS13225 0.80 -1.4 2,913,989 + LRK53_RS13225 0.80 +0.1 2,913,989 + LRK53_RS13225 0.80 +1.0 2,913,989 + LRK53_RS13225 0.80 -0.0 2,913,989 + LRK53_RS13225 0.80 -1.4 2,913,989 + LRK53_RS13225 0.80 -1.6 2,913,989 + LRK53_RS13225 0.80 -0.2 2,913,990 - LRK53_RS13225 0.80 -0.2 2,913,990 - LRK53_RS13225 0.80 -1.2 2,913,990 - LRK53_RS13225 0.80 -0.9 2,913,990 - LRK53_RS13225 0.80 -0.6 2,913,990 - LRK53_RS13225 0.80 -0.1 2,913,990 - LRK53_RS13225 0.80 -0.7 2,913,990 - LRK53_RS13225 0.80 -1.4 2,913,990 - LRK53_RS13225 0.80 -0.2 2,914,010 + LRK53_RS13225 0.82 +0.5 2,914,010 + LRK53_RS13225 0.82 -0.4 2,914,010 + LRK53_RS13225 0.82 +1.0 2,914,010 + LRK53_RS13225 0.82 -1.0 2,914,010 + LRK53_RS13225 0.82 +0.1 2,914,010 + LRK53_RS13225 0.82 +1.2 2,914,010 + LRK53_RS13225 0.82 -0.8 2,914,010 + LRK53_RS13225 0.82 -0.9 2,914,011 - LRK53_RS13225 0.82 -0.6 2,914,011 - LRK53_RS13225 0.82 -1.0 2,914,011 - LRK53_RS13225 0.82 -2.0 2,914,011 - LRK53_RS13225 0.82 -0.0 2,914,011 - LRK53_RS13225 0.82 -1.3 2,914,011 - LRK53_RS13225 0.82 -0.6 2,914,049 + LRK53_RS13225 0.85 +0.4 2,914,067 + LRK53_RS13225 0.87 -0.1 2,914,067 + LRK53_RS13225 0.87 -0.3 2,914,067 + LRK53_RS13225 0.87 +0.5 2,914,067 + LRK53_RS13225 0.87 -1.9 2,914,068 - LRK53_RS13225 0.87 +1.5 2,914,068 - LRK53_RS13225 0.87 +1.9 2,914,068 - LRK53_RS13225 0.87 -1.9 2,914,068 - LRK53_RS13225 0.87 +0.7 2,914,068 - LRK53_RS13225 0.87 -2.1 2,914,068 - LRK53_RS13225 0.87 +1.4 2,914,068 - LRK53_RS13225 0.87 -0.1 2,914,354 + LRK53_RS13230 0.42 -0.4 2,914,354 + LRK53_RS13230 0.42 -0.0 2,914,354 + LRK53_RS13230 0.42 +1.9 2,914,354 + LRK53_RS13230 0.42 +0.4 2,914,354 + LRK53_RS13230 0.42 -2.0 2,914,355 - LRK53_RS13230 0.42 +2.5 2,914,355 - LRK53_RS13230 0.42 +0.5 2,914,355 - LRK53_RS13230 0.42 -0.4 2,914,355 - LRK53_RS13230 0.42 +0.4 2,914,355 - LRK53_RS13230 0.42 -0.1 2,914,355 - LRK53_RS13230 0.42 -0.4 2,914,355 - LRK53_RS13230 0.42 -0.4 2,914,355 - LRK53_RS13230 0.42 +0.2 2,914,369 - LRK53_RS13230 0.46 -1.6 2,915,024 + LRK53_RS13235 0.17 -2.5 2,915,024 + LRK53_RS13235 0.17 -1.9 2,915,024 + LRK53_RS13235 0.17 -1.5 2,915,024 + LRK53_RS13235 0.17 +0.5 2,915,024 + LRK53_RS13235 0.17 -0.1 2,915,025 - LRK53_RS13235 0.17 -2.7 2,915,025 - LRK53_RS13235 0.17 +1.3 2,915,025 - LRK53_RS13235 0.17 +1.9 2,915,025 - LRK53_RS13235 0.17 -1.3 2,915,025 - LRK53_RS13235 0.17 -0.1 2,915,025 - LRK53_RS13235 0.17 +0.9 2,915,025 - LRK53_RS13235 0.17 -0.1 2,915,025 - LRK53_RS13235 0.17 +0.2 2,915,025 - LRK53_RS13235 0.17 -1.1 2,915,025 - LRK53_RS13235 0.17 -0.1 2,915,025 - LRK53_RS13235 0.17 +0.7 2,915,025 - LRK53_RS13235 0.17 -0.6 2,915,096 + LRK53_RS13235 0.22 -1.1 2,915,096 + LRK53_RS13235 0.22 +0.6 2,915,096 + LRK53_RS13235 0.22 -0.6 2,915,097 - LRK53_RS13235 0.22 +1.7 2,915,150 + LRK53_RS13235 0.25 -0.4 2,915,150 + LRK53_RS13235 0.25 +0.9 2,915,150 + LRK53_RS13235 0.25 -2.5 2,915,150 + LRK53_RS13235 0.25 +0.9 2,915,150 + LRK53_RS13235 0.25 -2.5 2,915,150 + LRK53_RS13235 0.25 +0.9 2,915,150 + LRK53_RS13235 0.25 -0.7 2,915,150 + LRK53_RS13235 0.25 +0.6 2,915,151 - LRK53_RS13235 0.25 +1.4 2,915,151 - LRK53_RS13235 0.25 -2.6 2,915,151 - LRK53_RS13235 0.25 +1.3 2,915,151 - LRK53_RS13235 0.25 -2.8 2,915,151 - LRK53_RS13235 0.25 -0.1 2,915,151 - LRK53_RS13235 0.25 -0.5 2,915,151 - LRK53_RS13235 0.25 -0.3 2,915,151 - LRK53_RS13235 0.25 +0.9 2,915,295 - LRK53_RS13235 0.35 +0.9 2,915,421 - LRK53_RS13235 0.43 -0.7 2,915,421 - LRK53_RS13235 0.43 +0.9 2,915,421 - LRK53_RS13235 0.43 +0.5 2,915,421 - LRK53_RS13235 0.43 +1.4 2,915,421 - LRK53_RS13235 0.43 +0.5 2,915,421 - LRK53_RS13235 0.43 -2.9 2,915,421 - LRK53_RS13235 0.43 -0.1 2,915,500 + LRK53_RS13235 0.49 -0.5 2,915,501 - LRK53_RS13235 0.49 -0.6 2,915,501 - LRK53_RS13235 0.49 -0.0
Or see this region's nucleotide sequence