Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11550

Experiment: NLDM_defined low phosphorus; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS11545 and LRK53_RS11550 are separated by 5 nucleotidesLRK53_RS11550 and LRK53_RS11555 are separated by 76 nucleotides LRK53_RS11545: LRK53_RS11545 - hypothetical protein, at 2,567,901 to 2,568,731 _RS11545 LRK53_RS11550: LRK53_RS11550 - DUF4785 family protein, at 2,568,737 to 2,569,990 _RS11550 LRK53_RS11555: LRK53_RS11555 - EF-P lysine aminoacylase EpmA, at 2,570,067 to 2,571,023 _RS11555 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2567.893 kb on + strandat 2567.893 kb on + strandat 2567.894 kb on - strandat 2567.894 kb on - strandat 2567.983 kb on - strandat 2567.991 kb on + strand, within LRK53_RS11545at 2567.992 kb on - strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.078 kb on + strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.079 kb on - strand, within LRK53_RS11545at 2568.357 kb on + strand, within LRK53_RS11545at 2568.405 kb on + strand, within LRK53_RS11545at 2568.405 kb on + strand, within LRK53_RS11545at 2568.405 kb on + strand, within LRK53_RS11545at 2568.406 kb on - strand, within LRK53_RS11545at 2568.406 kb on - strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.417 kb on + strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.418 kb on - strand, within LRK53_RS11545at 2568.470 kb on - strand, within LRK53_RS11545at 2568.513 kb on + strand, within LRK53_RS11545at 2568.513 kb on + strand, within LRK53_RS11545at 2568.513 kb on + strand, within LRK53_RS11545at 2568.514 kb on - strand, within LRK53_RS11545at 2568.514 kb on - strand, within LRK53_RS11545at 2568.514 kb on - strand, within LRK53_RS11545at 2568.514 kb on - strand, within LRK53_RS11545at 2568.514 kb on - strand, within LRK53_RS11545at 2568.525 kb on + strand, within LRK53_RS11545at 2568.526 kb on - strand, within LRK53_RS11545at 2569.007 kb on + strand, within LRK53_RS11550at 2569.008 kb on - strand, within LRK53_RS11550at 2569.008 kb on - strand, within LRK53_RS11550at 2569.168 kb on + strand, within LRK53_RS11550at 2569.169 kb on - strand, within LRK53_RS11550at 2569.169 kb on - strand, within LRK53_RS11550at 2569.310 kb on + strand, within LRK53_RS11550at 2569.311 kb on - strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.325 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.575 kb on + strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.576 kb on - strand, within LRK53_RS11550at 2569.627 kb on + strand, within LRK53_RS11550at 2569.773 kb on - strand, within LRK53_RS11550at 2569.773 kb on - strand, within LRK53_RS11550at 2569.866 kb on - strandat 2569.866 kb on - strandat 2569.866 kb on - strandat 2569.902 kb on - strandat 2569.965 kb on + strandat 2569.966 kb on - strandat 2569.988 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
remove
2,567,893 + -0.1
2,567,893 + -1.5
2,567,894 - -1.3
2,567,894 - -1.7
2,567,983 - -1.2
2,567,991 + LRK53_RS11545 0.11 +1.3
2,567,992 - LRK53_RS11545 0.11 +3.7
2,568,078 + LRK53_RS11545 0.21 -0.7
2,568,078 + LRK53_RS11545 0.21 +1.3
2,568,078 + LRK53_RS11545 0.21 -0.1
2,568,078 + LRK53_RS11545 0.21 -0.7
2,568,078 + LRK53_RS11545 0.21 -0.4
2,568,078 + LRK53_RS11545 0.21 +0.5
2,568,078 + LRK53_RS11545 0.21 +1.2
2,568,078 + LRK53_RS11545 0.21 -0.1
2,568,078 + LRK53_RS11545 0.21 -0.4
2,568,078 + LRK53_RS11545 0.21 +0.1
2,568,078 + LRK53_RS11545 0.21 +0.5
2,568,078 + LRK53_RS11545 0.21 -1.4
2,568,078 + LRK53_RS11545 0.21 -1.7
2,568,078 + LRK53_RS11545 0.21 -1.6
2,568,078 + LRK53_RS11545 0.21 +1.7
2,568,078 + LRK53_RS11545 0.21 -1.4
2,568,078 + LRK53_RS11545 0.21 -1.0
2,568,078 + LRK53_RS11545 0.21 -2.1
2,568,078 + LRK53_RS11545 0.21 -1.7
2,568,078 + LRK53_RS11545 0.21 -0.2
2,568,079 - LRK53_RS11545 0.21 -1.4
2,568,079 - LRK53_RS11545 0.21 +1.9
2,568,079 - LRK53_RS11545 0.21 -0.4
2,568,079 - LRK53_RS11545 0.21 -0.4
2,568,079 - LRK53_RS11545 0.21 +1.7
2,568,079 - LRK53_RS11545 0.21 +2.1
2,568,079 - LRK53_RS11545 0.21 -0.1
2,568,079 - LRK53_RS11545 0.21 +0.3
2,568,079 - LRK53_RS11545 0.21 +0.1
2,568,079 - LRK53_RS11545 0.21 -1.1
2,568,079 - LRK53_RS11545 0.21 +1.3
2,568,079 - LRK53_RS11545 0.21 -0.7
2,568,079 - LRK53_RS11545 0.21 +0.2
2,568,079 - LRK53_RS11545 0.21 -1.1
2,568,079 - LRK53_RS11545 0.21 +0.7
2,568,079 - LRK53_RS11545 0.21 -0.4
2,568,357 + LRK53_RS11545 0.55 -2.2
2,568,405 + LRK53_RS11545 0.61 -0.7
2,568,405 + LRK53_RS11545 0.61 -2.2
2,568,405 + LRK53_RS11545 0.61 +0.9
2,568,406 - LRK53_RS11545 0.61 -2.8
2,568,406 - LRK53_RS11545 0.61 -0.2
2,568,417 + LRK53_RS11545 0.62 +0.3
2,568,417 + LRK53_RS11545 0.62 +0.9
2,568,417 + LRK53_RS11545 0.62 +0.3
2,568,417 + LRK53_RS11545 0.62 -0.9
2,568,417 + LRK53_RS11545 0.62 +0.6
2,568,417 + LRK53_RS11545 0.62 +2.3
2,568,417 + LRK53_RS11545 0.62 -0.9
2,568,417 + LRK53_RS11545 0.62 -1.7
2,568,417 + LRK53_RS11545 0.62 -1.9
2,568,417 + LRK53_RS11545 0.62 -1.0
2,568,417 + LRK53_RS11545 0.62 -1.4
2,568,417 + LRK53_RS11545 0.62 +0.6
2,568,417 + LRK53_RS11545 0.62 -0.6
2,568,417 + LRK53_RS11545 0.62 -0.2
2,568,417 + LRK53_RS11545 0.62 -2.2
2,568,418 - LRK53_RS11545 0.62 -1.3
2,568,418 - LRK53_RS11545 0.62 +1.7
2,568,418 - LRK53_RS11545 0.62 -0.5
2,568,418 - LRK53_RS11545 0.62 +2.1
2,568,418 - LRK53_RS11545 0.62 -1.0
2,568,418 - LRK53_RS11545 0.62 -0.6
2,568,418 - LRK53_RS11545 0.62 +1.9
2,568,418 - LRK53_RS11545 0.62 +0.4
2,568,418 - LRK53_RS11545 0.62 -0.4
2,568,418 - LRK53_RS11545 0.62 -1.0
2,568,470 - LRK53_RS11545 0.68 -1.7
2,568,513 + LRK53_RS11545 0.74 -0.3
2,568,513 + LRK53_RS11545 0.74 -0.8
2,568,513 + LRK53_RS11545 0.74 -1.2
2,568,514 - LRK53_RS11545 0.74 +0.7
2,568,514 - LRK53_RS11545 0.74 -0.6
2,568,514 - LRK53_RS11545 0.74 +1.5
2,568,514 - LRK53_RS11545 0.74 +0.9
2,568,514 - LRK53_RS11545 0.74 -0.0
2,568,525 + LRK53_RS11545 0.75 +0.9
2,568,526 - LRK53_RS11545 0.75 -0.7
2,569,007 + LRK53_RS11550 0.22 -2.8
2,569,008 - LRK53_RS11550 0.22 -0.4
2,569,008 - LRK53_RS11550 0.22 -0.9
2,569,168 + LRK53_RS11550 0.34 -2.8
2,569,169 - LRK53_RS11550 0.34 -1.3
2,569,169 - LRK53_RS11550 0.34 -0.8
2,569,310 + LRK53_RS11550 0.46 -0.7
2,569,311 - LRK53_RS11550 0.46 +0.9
2,569,325 + LRK53_RS11550 0.47 -0.3
2,569,325 + LRK53_RS11550 0.47 -0.3
2,569,325 + LRK53_RS11550 0.47 +0.0
2,569,325 + LRK53_RS11550 0.47 -0.1
2,569,325 + LRK53_RS11550 0.47 +0.5
2,569,325 + LRK53_RS11550 0.47 -0.7
2,569,325 + LRK53_RS11550 0.47 +0.9
2,569,325 + LRK53_RS11550 0.47 -1.4
2,569,575 + LRK53_RS11550 0.67 -1.2
2,569,575 + LRK53_RS11550 0.67 -2.7
2,569,575 + LRK53_RS11550 0.67 -1.1
2,569,575 + LRK53_RS11550 0.67 -0.4
2,569,575 + LRK53_RS11550 0.67 -0.7
2,569,575 + LRK53_RS11550 0.67 +2.2
2,569,575 + LRK53_RS11550 0.67 -2.1
2,569,575 + LRK53_RS11550 0.67 +0.3
2,569,575 + LRK53_RS11550 0.67 +3.7
2,569,575 + LRK53_RS11550 0.67 +1.5
2,569,575 + LRK53_RS11550 0.67 +0.9
2,569,575 + LRK53_RS11550 0.67 -0.7
2,569,575 + LRK53_RS11550 0.67 +0.2
2,569,575 + LRK53_RS11550 0.67 -1.7
2,569,575 + LRK53_RS11550 0.67 -1.7
2,569,575 + LRK53_RS11550 0.67 -1.8
2,569,576 - LRK53_RS11550 0.67 -0.5
2,569,576 - LRK53_RS11550 0.67 -0.7
2,569,576 - LRK53_RS11550 0.67 -0.4
2,569,576 - LRK53_RS11550 0.67 -0.9
2,569,576 - LRK53_RS11550 0.67 -0.7
2,569,576 - LRK53_RS11550 0.67 +0.5
2,569,576 - LRK53_RS11550 0.67 -1.0
2,569,576 - LRK53_RS11550 0.67 -0.7
2,569,576 - LRK53_RS11550 0.67 -0.1
2,569,576 - LRK53_RS11550 0.67 -1.4
2,569,627 + LRK53_RS11550 0.71 -0.1
2,569,773 - LRK53_RS11550 0.83 +0.6
2,569,773 - LRK53_RS11550 0.83 -0.7
2,569,866 - +0.9
2,569,866 - -2.1
2,569,866 - -0.4
2,569,902 - +2.2
2,569,965 + +0.2
2,569,966 - +1.3
2,569,988 + -1.2

Or see this region's nucleotide sequence