Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05460

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05455 and LRK53_RS05460 are separated by 100 nucleotidesLRK53_RS05460 and LRK53_RS05465 are separated by 70 nucleotidesLRK53_RS05465 and LRK53_RS05470 are separated by 89 nucleotides LRK53_RS05455: LRK53_RS05455 - NAD(P)-dependent alcohol dehydrogenase, at 1,269,777 to 1,270,784 _RS05455 LRK53_RS05460: LRK53_RS05460 - aldo/keto reductase, at 1,270,885 to 1,271,859 _RS05460 LRK53_RS05465: LRK53_RS05465 - hemin uptake protein HemP, at 1,271,930 to 1,272,130 _RS05465 LRK53_RS05470: LRK53_RS05470 - hypothetical protein, at 1,272,220 to 1,272,795 _RS05470 Position (kb) 1270 1271 1272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1270.300 kb on + strand, within LRK53_RS05455at 1270.300 kb on + strand, within LRK53_RS05455at 1270.300 kb on + strand, within LRK53_RS05455at 1270.301 kb on - strand, within LRK53_RS05455at 1270.675 kb on + strand, within LRK53_RS05455at 1270.675 kb on + strand, within LRK53_RS05455at 1270.675 kb on + strand, within LRK53_RS05455at 1270.676 kb on - strand, within LRK53_RS05455at 1270.676 kb on - strand, within LRK53_RS05455at 1270.819 kb on + strandat 1270.820 kb on - strandat 1270.892 kb on - strandat 1270.906 kb on - strandat 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.044 kb on + strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.045 kb on - strand, within LRK53_RS05460at 1271.236 kb on + strand, within LRK53_RS05460at 1271.236 kb on + strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.237 kb on - strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.248 kb on + strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.249 kb on - strand, within LRK53_RS05460at 1271.335 kb on + strand, within LRK53_RS05460at 1271.335 kb on + strand, within LRK53_RS05460at 1271.335 kb on + strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.336 kb on - strand, within LRK53_RS05460at 1271.408 kb on - strand, within LRK53_RS05460at 1271.434 kb on + strand, within LRK53_RS05460at 1271.434 kb on + strand, within LRK53_RS05460at 1271.434 kb on + strand, within LRK53_RS05460at 1271.434 kb on + strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.435 kb on - strand, within LRK53_RS05460at 1271.470 kb on + strand, within LRK53_RS05460at 1271.470 kb on + strand, within LRK53_RS05460at 1271.470 kb on + strand, within LRK53_RS05460at 1271.471 kb on - strand, within LRK53_RS05460at 1271.471 kb on - strand, within LRK53_RS05460at 1271.471 kb on - strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.482 kb on + strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.483 kb on - strand, within LRK53_RS05460at 1271.491 kb on + strand, within LRK53_RS05460at 1271.492 kb on - strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.548 kb on + strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1271.549 kb on - strand, within LRK53_RS05460at 1272.046 kb on + strand, within LRK53_RS05465at 1272.046 kb on + strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.047 kb on - strand, within LRK53_RS05465at 1272.060 kb on + strand, within LRK53_RS05465at 1272.083 kb on + strand, within LRK53_RS05465at 1272.083 kb on + strand, within LRK53_RS05465at 1272.084 kb on - strand, within LRK53_RS05465at 1272.084 kb on - strand, within LRK53_RS05465at 1272.084 kb on - strand, within LRK53_RS05465at 1272.128 kb on + strandat 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.352 kb on + strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.353 kb on - strand, within LRK53_RS05470at 1272.559 kb on + strand, within LRK53_RS05470at 1272.560 kb on - strand, within LRK53_RS05470at 1272.793 kb on + strandat 1272.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,270,300 + LRK53_RS05455 0.52 -1.2
1,270,300 + LRK53_RS05455 0.52 -1.6
1,270,300 + LRK53_RS05455 0.52 +0.0
1,270,301 - LRK53_RS05455 0.52 +0.6
1,270,675 + LRK53_RS05455 0.89 +0.3
1,270,675 + LRK53_RS05455 0.89 -0.3
1,270,675 + LRK53_RS05455 0.89 -1.2
1,270,676 - LRK53_RS05455 0.89 -1.2
1,270,676 - LRK53_RS05455 0.89 -0.7
1,270,819 + +0.0
1,270,820 - -0.5
1,270,892 - +1.3
1,270,906 - +0.8
1,271,044 + LRK53_RS05460 0.16 -1.9
1,271,044 + LRK53_RS05460 0.16 -0.9
1,271,044 + LRK53_RS05460 0.16 -0.2
1,271,044 + LRK53_RS05460 0.16 -1.1
1,271,044 + LRK53_RS05460 0.16 -0.7
1,271,044 + LRK53_RS05460 0.16 +0.7
1,271,044 + LRK53_RS05460 0.16 -0.2
1,271,044 + LRK53_RS05460 0.16 -2.7
1,271,044 + LRK53_RS05460 0.16 -1.7
1,271,044 + LRK53_RS05460 0.16 -0.7
1,271,044 + LRK53_RS05460 0.16 +1.4
1,271,044 + LRK53_RS05460 0.16 -0.2
1,271,045 - LRK53_RS05460 0.16 +0.3
1,271,045 - LRK53_RS05460 0.16 -0.2
1,271,045 - LRK53_RS05460 0.16 +0.8
1,271,045 - LRK53_RS05460 0.16 -0.9
1,271,045 - LRK53_RS05460 0.16 +0.4
1,271,045 - LRK53_RS05460 0.16 +0.2
1,271,045 - LRK53_RS05460 0.16 -0.4
1,271,045 - LRK53_RS05460 0.16 -2.4
1,271,045 - LRK53_RS05460 0.16 -2.0
1,271,045 - LRK53_RS05460 0.16 -0.7
1,271,045 - LRK53_RS05460 0.16 -2.7
1,271,236 + LRK53_RS05460 0.36 +0.8
1,271,236 + LRK53_RS05460 0.36 -0.8
1,271,237 - LRK53_RS05460 0.36 +0.4
1,271,237 - LRK53_RS05460 0.36 -1.7
1,271,237 - LRK53_RS05460 0.36 -0.2
1,271,237 - LRK53_RS05460 0.36 -0.8
1,271,237 - LRK53_RS05460 0.36 -0.7
1,271,237 - LRK53_RS05460 0.36 -0.7
1,271,237 - LRK53_RS05460 0.36 -1.8
1,271,237 - LRK53_RS05460 0.36 -0.7
1,271,237 - LRK53_RS05460 0.36 +0.8
1,271,248 + LRK53_RS05460 0.37 -0.9
1,271,248 + LRK53_RS05460 0.37 +0.4
1,271,248 + LRK53_RS05460 0.37 -1.2
1,271,248 + LRK53_RS05460 0.37 -0.5
1,271,248 + LRK53_RS05460 0.37 -1.7
1,271,249 - LRK53_RS05460 0.37 -1.3
1,271,249 - LRK53_RS05460 0.37 +0.8
1,271,249 - LRK53_RS05460 0.37 -0.5
1,271,249 - LRK53_RS05460 0.37 +0.5
1,271,249 - LRK53_RS05460 0.37 +0.8
1,271,249 - LRK53_RS05460 0.37 -0.2
1,271,249 - LRK53_RS05460 0.37 -1.6
1,271,335 + LRK53_RS05460 0.46 -0.6
1,271,335 + LRK53_RS05460 0.46 -1.7
1,271,335 + LRK53_RS05460 0.46 +1.3
1,271,336 - LRK53_RS05460 0.46 -2.0
1,271,336 - LRK53_RS05460 0.46 -2.7
1,271,336 - LRK53_RS05460 0.46 +1.8
1,271,336 - LRK53_RS05460 0.46 -2.1
1,271,336 - LRK53_RS05460 0.46 -0.7
1,271,408 - LRK53_RS05460 0.54 +0.1
1,271,434 + LRK53_RS05460 0.56 +0.5
1,271,434 + LRK53_RS05460 0.56 -1.5
1,271,434 + LRK53_RS05460 0.56 -1.2
1,271,434 + LRK53_RS05460 0.56 -1.7
1,271,435 - LRK53_RS05460 0.56 -0.5
1,271,435 - LRK53_RS05460 0.56 -0.2
1,271,435 - LRK53_RS05460 0.56 +0.8
1,271,435 - LRK53_RS05460 0.56 -0.1
1,271,470 + LRK53_RS05460 0.60 +0.3
1,271,470 + LRK53_RS05460 0.60 +0.8
1,271,470 + LRK53_RS05460 0.60 -2.0
1,271,471 - LRK53_RS05460 0.60 -0.2
1,271,471 - LRK53_RS05460 0.60 +1.6
1,271,471 - LRK53_RS05460 0.60 -0.3
1,271,482 + LRK53_RS05460 0.61 -1.7
1,271,482 + LRK53_RS05460 0.61 -1.5
1,271,482 + LRK53_RS05460 0.61 +2.4
1,271,482 + LRK53_RS05460 0.61 -1.5
1,271,482 + LRK53_RS05460 0.61 -1.3
1,271,482 + LRK53_RS05460 0.61 +0.0
1,271,482 + LRK53_RS05460 0.61 -0.2
1,271,483 - LRK53_RS05460 0.61 +0.3
1,271,483 - LRK53_RS05460 0.61 -0.2
1,271,483 - LRK53_RS05460 0.61 -1.2
1,271,483 - LRK53_RS05460 0.61 -0.2
1,271,483 - LRK53_RS05460 0.61 -0.7
1,271,491 + LRK53_RS05460 0.62 +0.7
1,271,492 - LRK53_RS05460 0.62 +0.8
1,271,548 + LRK53_RS05460 0.68 +0.8
1,271,548 + LRK53_RS05460 0.68 -0.2
1,271,548 + LRK53_RS05460 0.68 -0.2
1,271,548 + LRK53_RS05460 0.68 -2.2
1,271,548 + LRK53_RS05460 0.68 -0.2
1,271,548 + LRK53_RS05460 0.68 -1.0
1,271,548 + LRK53_RS05460 0.68 -0.8
1,271,549 - LRK53_RS05460 0.68 +0.1
1,271,549 - LRK53_RS05460 0.68 +0.1
1,271,549 - LRK53_RS05460 0.68 -1.4
1,271,549 - LRK53_RS05460 0.68 -0.6
1,272,046 + LRK53_RS05465 0.58 +0.6
1,272,046 + LRK53_RS05465 0.58 +1.8
1,272,047 - LRK53_RS05465 0.58 -2.2
1,272,047 - LRK53_RS05465 0.58 -0.7
1,272,047 - LRK53_RS05465 0.58 -1.5
1,272,047 - LRK53_RS05465 0.58 -0.8
1,272,047 - LRK53_RS05465 0.58 +0.0
1,272,060 + LRK53_RS05465 0.65 -0.0
1,272,083 + LRK53_RS05465 0.76 +0.8
1,272,083 + LRK53_RS05465 0.76 -0.5
1,272,084 - LRK53_RS05465 0.77 +0.8
1,272,084 - LRK53_RS05465 0.77 -0.5
1,272,084 - LRK53_RS05465 0.77 +0.8
1,272,128 + +0.4
1,272,352 + LRK53_RS05470 0.23 +0.8
1,272,352 + LRK53_RS05470 0.23 +0.4
1,272,352 + LRK53_RS05470 0.23 -3.6
1,272,352 + LRK53_RS05470 0.23 -1.2
1,272,352 + LRK53_RS05470 0.23 +0.4
1,272,352 + LRK53_RS05470 0.23 -0.2
1,272,352 + LRK53_RS05470 0.23 -0.6
1,272,352 + LRK53_RS05470 0.23 +0.8
1,272,352 + LRK53_RS05470 0.23 -0.7
1,272,352 + LRK53_RS05470 0.23 -0.7
1,272,352 + LRK53_RS05470 0.23 -0.7
1,272,352 + LRK53_RS05470 0.23 -1.2
1,272,352 + LRK53_RS05470 0.23 -2.3
1,272,352 + LRK53_RS05470 0.23 -0.5
1,272,353 - LRK53_RS05470 0.23 -1.5
1,272,353 - LRK53_RS05470 0.23 -0.2
1,272,353 - LRK53_RS05470 0.23 +1.1
1,272,353 - LRK53_RS05470 0.23 -1.2
1,272,353 - LRK53_RS05470 0.23 -0.7
1,272,353 - LRK53_RS05470 0.23 +2.4
1,272,353 - LRK53_RS05470 0.23 -1.2
1,272,353 - LRK53_RS05470 0.23 -0.6
1,272,353 - LRK53_RS05470 0.23 +0.8
1,272,353 - LRK53_RS05470 0.23 -0.7
1,272,559 + LRK53_RS05470 0.59 -3.1
1,272,560 - LRK53_RS05470 0.59 -2.2
1,272,793 + -2.2
1,272,794 - -0.6

Or see this region's nucleotide sequence