Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01805

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01800 and LRK53_RS01805 are separated by 46 nucleotidesLRK53_RS01805 and LRK53_RS01810 are separated by 47 nucleotidesLRK53_RS01810 and LRK53_RS01815 are separated by 73 nucleotides LRK53_RS01800: LRK53_RS01800 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 421,980 to 423,425 _RS01800 LRK53_RS01805: LRK53_RS01805 - LON peptidase substrate-binding domain-containing protein, at 423,472 to 424,080 _RS01805 LRK53_RS01810: LRK53_RS01810 - NAD(P)-dependent oxidoreductase, at 424,128 to 424,946 _RS01810 LRK53_RS01815: LRK53_RS01815 - acetylornithine/succinylornithine family transaminase, at 425,020 to 426,255 _RS01815 Position (kb) 423 424 425Strain fitness (log2 ratio) -2 -1 0 1 2at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.629 kb on - strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.049 kb on - strand, within LRK53_RS01800at 423.049 kb on - strand, within LRK53_RS01800at 423.086 kb on + strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.460 kb on + strandat 423.461 kb on - strandat 423.461 kb on - strandat 423.461 kb on - strandat 423.461 kb on - strandat 423.578 kb on - strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.771 kb on - strand, within LRK53_RS01805at 424.094 kb on + strandat 424.094 kb on + strandat 424.094 kb on + strandat 424.095 kb on - strandat 424.095 kb on - strandat 424.095 kb on - strandat 424.490 kb on + strand, within LRK53_RS01810at 424.490 kb on + strand, within LRK53_RS01810at 424.490 kb on + strand, within LRK53_RS01810at 424.490 kb on + strand, within LRK53_RS01810at 424.530 kb on + strand, within LRK53_RS01810at 424.530 kb on + strand, within LRK53_RS01810at 424.530 kb on + strand, within LRK53_RS01810at 424.530 kb on + strand, within LRK53_RS01810at 424.530 kb on + strand, within LRK53_RS01810at 424.531 kb on - strand, within LRK53_RS01810at 424.531 kb on - strand, within LRK53_RS01810at 424.531 kb on - strand, within LRK53_RS01810at 424.531 kb on - strand, within LRK53_RS01810at 424.531 kb on - strand, within LRK53_RS01810at 424.617 kb on + strand, within LRK53_RS01810at 424.617 kb on + strand, within LRK53_RS01810at 424.617 kb on + strand, within LRK53_RS01810at 424.618 kb on - strand, within LRK53_RS01810at 424.618 kb on - strand, within LRK53_RS01810at 424.618 kb on - strand, within LRK53_RS01810at 424.618 kb on - strand, within LRK53_RS01810at 424.618 kb on - strand, within LRK53_RS01810at 424.618 kb on - strand, within LRK53_RS01810at 424.772 kb on + strand, within LRK53_RS01810at 424.773 kb on - strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.830 kb on + strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.831 kb on - strand, within LRK53_RS01810at 424.896 kb on + strandat 424.896 kb on + strandat 424.896 kb on + strandat 424.896 kb on + strandat 424.896 kb on + strandat 424.897 kb on - strandat 424.897 kb on - strandat 424.978 kb on + strandat 425.071 kb on + strandat 425.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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422,550 + LRK53_RS01800 0.39 -1.3
422,550 + LRK53_RS01800 0.39 +2.0
422,550 + LRK53_RS01800 0.39 -1.3
422,550 + LRK53_RS01800 0.39 +0.4
422,550 + LRK53_RS01800 0.39 +1.0
422,550 + LRK53_RS01800 0.39 +1.0
422,550 + LRK53_RS01800 0.39 -0.6
422,550 + LRK53_RS01800 0.39 -1.0
422,551 - LRK53_RS01800 0.39 +1.0
422,551 - LRK53_RS01800 0.39 -0.6
422,551 - LRK53_RS01800 0.39 -0.7
422,551 - LRK53_RS01800 0.39 +0.0
422,629 - LRK53_RS01800 0.45 -1.2
423,048 + LRK53_RS01800 0.74 -1.2
423,048 + LRK53_RS01800 0.74 -1.0
423,048 + LRK53_RS01800 0.74 -1.8
423,048 + LRK53_RS01800 0.74 +1.0
423,048 + LRK53_RS01800 0.74 -0.6
423,048 + LRK53_RS01800 0.74 -0.6
423,049 - LRK53_RS01800 0.74 -0.7
423,049 - LRK53_RS01800 0.74 +1.0
423,086 + LRK53_RS01800 0.76 -0.6
423,087 - LRK53_RS01800 0.77 +0.0
423,087 - LRK53_RS01800 0.77 +0.6
423,087 - LRK53_RS01800 0.77 +0.5
423,087 - LRK53_RS01800 0.77 +0.6
423,087 - LRK53_RS01800 0.77 -0.3
423,087 - LRK53_RS01800 0.77 -0.2
423,460 + -0.4
423,461 - +1.0
423,461 - -1.2
423,461 - -2.6
423,461 - -1.8
423,578 - LRK53_RS01805 0.17 +1.9
423,581 + LRK53_RS01805 0.18 +0.3
423,581 + LRK53_RS01805 0.18 -0.6
423,581 + LRK53_RS01805 0.18 +0.8
423,581 + LRK53_RS01805 0.18 +0.7
423,581 + LRK53_RS01805 0.18 +2.6
423,581 + LRK53_RS01805 0.18 +0.0
423,581 + LRK53_RS01805 0.18 -0.7
423,581 + LRK53_RS01805 0.18 +2.0
423,581 + LRK53_RS01805 0.18 -0.6
423,581 + LRK53_RS01805 0.18 +0.0
423,581 + LRK53_RS01805 0.18 -2.6
423,581 + LRK53_RS01805 0.18 +0.6
423,581 + LRK53_RS01805 0.18 +0.1
423,582 - LRK53_RS01805 0.18 -2.0
423,582 - LRK53_RS01805 0.18 +0.0
423,582 - LRK53_RS01805 0.18 +0.7
423,582 - LRK53_RS01805 0.18 +1.0
423,582 - LRK53_RS01805 0.18 -0.6
423,582 - LRK53_RS01805 0.18 -1.1
423,582 - LRK53_RS01805 0.18 +0.5
423,582 - LRK53_RS01805 0.18 +0.0
423,582 - LRK53_RS01805 0.18 +0.0
423,582 - LRK53_RS01805 0.18 -1.3
423,582 - LRK53_RS01805 0.18 -1.3
423,582 - LRK53_RS01805 0.18 +0.6
423,771 - LRK53_RS01805 0.49 -2.2
424,094 + +1.2
424,094 + -0.6
424,094 + +1.0
424,095 - +1.0
424,095 - +0.1
424,095 - +1.0
424,490 + LRK53_RS01810 0.44 -1.3
424,490 + LRK53_RS01810 0.44 +0.4
424,490 + LRK53_RS01810 0.44 -0.8
424,490 + LRK53_RS01810 0.44 +2.0
424,530 + LRK53_RS01810 0.49 +0.0
424,530 + LRK53_RS01810 0.49 -0.6
424,530 + LRK53_RS01810 0.49 +0.3
424,530 + LRK53_RS01810 0.49 -1.6
424,530 + LRK53_RS01810 0.49 +1.0
424,531 - LRK53_RS01810 0.49 -0.5
424,531 - LRK53_RS01810 0.49 +0.4
424,531 - LRK53_RS01810 0.49 -1.3
424,531 - LRK53_RS01810 0.49 -1.3
424,531 - LRK53_RS01810 0.49 +0.8
424,617 + LRK53_RS01810 0.60 -0.6
424,617 + LRK53_RS01810 0.60 -1.8
424,617 + LRK53_RS01810 0.60 +0.6
424,618 - LRK53_RS01810 0.60 -0.9
424,618 - LRK53_RS01810 0.60 -0.8
424,618 - LRK53_RS01810 0.60 +0.5
424,618 - LRK53_RS01810 0.60 +1.0
424,618 - LRK53_RS01810 0.60 +0.0
424,618 - LRK53_RS01810 0.60 -1.4
424,772 + LRK53_RS01810 0.79 +0.0
424,773 - LRK53_RS01810 0.79 +0.2
424,830 + LRK53_RS01810 0.86 +0.7
424,830 + LRK53_RS01810 0.86 -0.4
424,830 + LRK53_RS01810 0.86 -0.8
424,830 + LRK53_RS01810 0.86 -1.4
424,830 + LRK53_RS01810 0.86 -2.5
424,830 + LRK53_RS01810 0.86 -1.3
424,830 + LRK53_RS01810 0.86 +1.0
424,830 + LRK53_RS01810 0.86 -1.0
424,830 + LRK53_RS01810 0.86 -1.8
424,830 + LRK53_RS01810 0.86 -0.7
424,830 + LRK53_RS01810 0.86 +0.7
424,830 + LRK53_RS01810 0.86 -0.6
424,830 + LRK53_RS01810 0.86 -1.8
424,830 + LRK53_RS01810 0.86 -0.5
424,830 + LRK53_RS01810 0.86 -0.6
424,831 - LRK53_RS01810 0.86 -2.7
424,831 - LRK53_RS01810 0.86 +0.5
424,831 - LRK53_RS01810 0.86 -1.0
424,831 - LRK53_RS01810 0.86 -0.1
424,831 - LRK53_RS01810 0.86 -0.6
424,831 - LRK53_RS01810 0.86 -2.1
424,831 - LRK53_RS01810 0.86 +0.8
424,831 - LRK53_RS01810 0.86 -0.8
424,896 + -1.6
424,896 + -1.3
424,896 + +0.4
424,896 + +0.4
424,896 + -1.3
424,897 - -0.3
424,897 - -2.5
424,978 + -1.0
425,071 + +1.0
425,072 - -2.6

Or see this region's nucleotide sequence