Experiment: Shikimic Acid (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00514 and PFR28_00515 overlap by 7 nucleotides PFR28_00515 and PFR28_00516 are separated by 193 nucleotides PFR28_00516 and PFR28_00517 are separated by 138 nucleotides PFR28_00517 and PFR28_00518 overlap by 8 nucleotides
PFR28_00514: PFR28_00514 - hypothetical protein, at 549,952 to 550,452
_00514
PFR28_00515: PFR28_00515 - hypothetical protein, at 550,446 to 550,943
_00515
PFR28_00516: PFR28_00516 - Peptidoglycan-associated lipoprotein, at 551,137 to 551,832
_00516
PFR28_00517: PFR28_00517 - hypothetical protein, at 551,971 to 552,243
_00517
PFR28_00518: PFR28_00518 - hypothetical protein, at 552,236 to 552,994
_00518
Position (kb) 551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.286 kb on + strand, within PFR28_00514 at 550.287 kb on - strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.447 kb on + strand at 550.447 kb on + strand at 550.447 kb on + strand at 550.447 kb on + strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.457 kb on - strand at 550.457 kb on - strand at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.520 kb on - strand, within PFR28_00515 at 550.520 kb on - strand, within PFR28_00515 at 550.520 kb on - strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.653 kb on - strand, within PFR28_00515 at 551.089 kb on + strand at 551.144 kb on + strand at 551.144 kb on + strand at 551.144 kb on + strand at 551.144 kb on + strand at 551.144 kb on + strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.145 kb on - strand at 551.175 kb on + strand at 551.175 kb on + strand at 551.176 kb on - strand at 551.176 kb on - strand at 551.379 kb on + strand, within PFR28_00516 at 551.626 kb on - strand, within PFR28_00516 at 551.650 kb on + strand, within PFR28_00516 at 551.650 kb on + strand, within PFR28_00516 at 551.650 kb on + strand, within PFR28_00516 at 551.650 kb on + strand, within PFR28_00516 at 551.650 kb on + strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.651 kb on - strand, within PFR28_00516 at 551.652 kb on + strand, within PFR28_00516 at 551.695 kb on + strand, within PFR28_00516 at 551.695 kb on + strand, within PFR28_00516 at 551.695 kb on + strand, within PFR28_00516 at 551.696 kb on - strand, within PFR28_00516 at 551.696 kb on - strand, within PFR28_00516 at 551.696 kb on - strand, within PFR28_00516 at 551.696 kb on - strand, within PFR28_00516 at 551.696 kb on - strand, within PFR28_00516 at 551.714 kb on + strand, within PFR28_00516 at 551.715 kb on - strand, within PFR28_00516 at 551.715 kb on - strand, within PFR28_00516 at 551.822 kb on + strand at 551.870 kb on + strand at 551.891 kb on + strand at 551.914 kb on + strand at 551.915 kb on - strand at 551.915 kb on - strand at 551.933 kb on + strand at 551.933 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.970 kb on + strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 551.971 kb on - strand at 552.241 kb on + strand at 552.241 kb on + strand at 552.242 kb on - strand at 552.300 kb on + strand at 552.300 kb on + strand at 552.300 kb on + strand at 552.301 kb on - strand at 552.374 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.548 kb on + strand, within PFR28_00518 at 552.549 kb on - strand, within PFR28_00518 at 552.549 kb on - strand, within PFR28_00518 at 552.549 kb on - strand, within PFR28_00518 at 552.549 kb on - strand, within PFR28_00518 at 552.549 kb on - strand, within PFR28_00518 at 552.549 kb on - strand, within PFR28_00518 at 552.549 kb on - strand, within PFR28_00518 at 552.653 kb on + strand, within PFR28_00518 at 552.654 kb on - strand, within PFR28_00518 at 552.654 kb on - strand, within PFR28_00518 at 552.654 kb on - strand, within PFR28_00518 at 552.816 kb on + strand, within PFR28_00518 at 552.816 kb on + strand, within PFR28_00518 at 552.816 kb on + strand, within PFR28_00518 at 552.816 kb on + strand, within PFR28_00518 at 552.817 kb on - strand, within PFR28_00518 at 552.817 kb on - strand, within PFR28_00518
Per-strain Table
Position Strand Gene LocusTag Fraction Shikimic Acid (C) 10 mM remove 550,286 + PFR28_00514 0.67 -0.7 550,287 - PFR28_00514 0.67 -0.6 550,307 + PFR28_00514 0.71 -0.0 550,307 + PFR28_00514 0.71 -0.5 550,307 + PFR28_00514 0.71 -0.9 550,307 + PFR28_00514 0.71 -0.4 550,307 + PFR28_00514 0.71 -1.7 550,308 - PFR28_00514 0.71 -0.2 550,308 - PFR28_00514 0.71 -1.2 550,308 - PFR28_00514 0.71 -0.0 550,308 - PFR28_00514 0.71 -1.5 550,308 - PFR28_00514 0.71 -0.1 550,308 - PFR28_00514 0.71 +0.3 550,308 - PFR28_00514 0.71 -0.3 550,308 - PFR28_00514 0.71 +0.1 550,308 - PFR28_00514 0.71 +0.2 550,308 - PFR28_00514 0.71 +0.6 550,308 - PFR28_00514 0.71 -1.3 550,308 - PFR28_00514 0.71 -0.7 550,447 + -1.5 550,447 + -0.1 550,447 + +0.4 550,447 + +0.6 550,448 - -1.2 550,448 - +2.0 550,448 - -1.6 550,448 - +0.3 550,448 - +0.1 550,448 - +1.0 550,448 - +1.1 550,448 - -0.6 550,448 - -0.7 550,448 - -0.1 550,448 - -0.7 550,448 - -0.5 550,448 - +2.0 550,457 - -0.0 550,457 - +1.0 550,519 + PFR28_00515 0.15 -0.6 550,519 + PFR28_00515 0.15 +0.0 550,519 + PFR28_00515 0.15 -0.1 550,519 + PFR28_00515 0.15 -0.4 550,519 + PFR28_00515 0.15 -0.2 550,519 + PFR28_00515 0.15 -1.3 550,519 + PFR28_00515 0.15 -0.3 550,519 + PFR28_00515 0.15 -1.2 550,519 + PFR28_00515 0.15 -1.3 550,519 + PFR28_00515 0.15 +0.7 550,519 + PFR28_00515 0.15 -0.8 550,520 - PFR28_00515 0.15 +2.3 550,520 - PFR28_00515 0.15 +0.3 550,520 - PFR28_00515 0.15 +0.5 550,534 + PFR28_00515 0.18 -2.5 550,534 + PFR28_00515 0.18 -0.5 550,534 + PFR28_00515 0.18 +0.1 550,534 + PFR28_00515 0.18 -0.3 550,534 + PFR28_00515 0.18 -0.9 550,534 + PFR28_00515 0.18 +0.8 550,534 + PFR28_00515 0.18 +0.1 550,534 + PFR28_00515 0.18 -0.9 550,534 + PFR28_00515 0.18 -0.2 550,534 + PFR28_00515 0.18 +0.4 550,534 + PFR28_00515 0.18 -1.3 550,534 + PFR28_00515 0.18 -0.1 550,534 + PFR28_00515 0.18 -0.5 550,534 + PFR28_00515 0.18 -0.3 550,535 - PFR28_00515 0.18 -0.3 550,535 - PFR28_00515 0.18 +1.0 550,535 - PFR28_00515 0.18 -2.4 550,535 - PFR28_00515 0.18 -2.0 550,535 - PFR28_00515 0.18 -2.2 550,535 - PFR28_00515 0.18 +1.9 550,535 - PFR28_00515 0.18 -0.9 550,535 - PFR28_00515 0.18 +0.9 550,653 - PFR28_00515 0.42 +0.2 551,089 + +1.2 551,144 + -0.1 551,144 + -0.1 551,144 + -1.2 551,144 + -0.3 551,144 + -1.3 551,145 - -0.6 551,145 - +1.8 551,145 - -0.5 551,145 - -2.3 551,145 - +0.5 551,145 - -0.5 551,145 - +1.4 551,145 - -0.6 551,145 - -1.3 551,145 - -2.2 551,145 - +0.1 551,145 - -0.9 551,145 - -0.3 551,145 - -1.5 551,145 - +1.7 551,175 + +0.4 551,175 + -1.1 551,176 - +0.5 551,176 - -1.1 551,379 + PFR28_00516 0.35 +0.0 551,626 - PFR28_00516 0.70 +1.1 551,650 + PFR28_00516 0.74 -0.0 551,650 + PFR28_00516 0.74 -0.2 551,650 + PFR28_00516 0.74 +0.5 551,650 + PFR28_00516 0.74 -1.6 551,650 + PFR28_00516 0.74 +0.4 551,651 - PFR28_00516 0.74 -1.3 551,651 - PFR28_00516 0.74 +0.3 551,651 - PFR28_00516 0.74 +0.1 551,651 - PFR28_00516 0.74 +0.5 551,651 - PFR28_00516 0.74 -1.4 551,651 - PFR28_00516 0.74 +1.1 551,651 - PFR28_00516 0.74 +1.1 551,651 - PFR28_00516 0.74 -0.0 551,651 - PFR28_00516 0.74 +0.1 551,652 + PFR28_00516 0.74 +0.8 551,695 + PFR28_00516 0.80 -0.0 551,695 + PFR28_00516 0.80 +0.0 551,695 + PFR28_00516 0.80 -0.0 551,696 - PFR28_00516 0.80 -0.1 551,696 - PFR28_00516 0.80 +1.3 551,696 - PFR28_00516 0.80 -0.3 551,696 - PFR28_00516 0.80 +0.5 551,696 - PFR28_00516 0.80 -0.9 551,714 + PFR28_00516 0.83 +0.4 551,715 - PFR28_00516 0.83 +0.7 551,715 - PFR28_00516 0.83 -0.6 551,822 + +0.2 551,870 + +0.4 551,891 + +0.8 551,914 + -1.9 551,915 - +0.9 551,915 - +0.4 551,933 + +1.4 551,933 + -0.7 551,970 + -0.2 551,970 + -0.1 551,970 + -0.5 551,970 + +0.2 551,970 + +0.4 551,970 + +1.2 551,970 + -0.6 551,970 + +0.1 551,970 + +1.3 551,970 + +0.6 551,970 + +0.8 551,970 + -0.5 551,970 + +1.8 551,971 - +0.1 551,971 - +0.6 551,971 - +1.2 551,971 - -1.3 551,971 - +2.0 551,971 - +0.1 551,971 - -0.4 551,971 - +1.3 551,971 - -1.1 552,241 + -0.1 552,241 + -0.3 552,242 - -1.0 552,300 + +2.0 552,300 + -0.8 552,300 + -0.1 552,301 - +1.2 552,374 + PFR28_00518 0.18 +1.0 552,548 + PFR28_00518 0.41 +0.9 552,548 + PFR28_00518 0.41 +1.1 552,548 + PFR28_00518 0.41 -0.5 552,548 + PFR28_00518 0.41 +0.2 552,548 + PFR28_00518 0.41 -1.2 552,548 + PFR28_00518 0.41 -0.2 552,548 + PFR28_00518 0.41 -2.5 552,548 + PFR28_00518 0.41 +0.1 552,549 - PFR28_00518 0.41 +0.1 552,549 - PFR28_00518 0.41 -0.1 552,549 - PFR28_00518 0.41 -0.9 552,549 - PFR28_00518 0.41 +1.6 552,549 - PFR28_00518 0.41 +0.4 552,549 - PFR28_00518 0.41 +0.4 552,549 - PFR28_00518 0.41 -0.7 552,653 + PFR28_00518 0.55 -0.9 552,654 - PFR28_00518 0.55 +0.0 552,654 - PFR28_00518 0.55 +0.6 552,654 - PFR28_00518 0.55 -0.4 552,816 + PFR28_00518 0.76 -0.7 552,816 + PFR28_00518 0.76 -0.6 552,816 + PFR28_00518 0.76 -0.9 552,816 + PFR28_00518 0.76 -0.8 552,817 - PFR28_00518 0.77 -0.3 552,817 - PFR28_00518 0.77 +0.3
Or see this region's nucleotide sequence