Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06080

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06075 and LRK53_RS06080 are separated by 47 nucleotidesLRK53_RS06080 and LRK53_RS06085 are separated by 61 nucleotidesLRK53_RS06085 and LRK53_RS06090 are separated by 125 nucleotides LRK53_RS06075: LRK53_RS06075 - exodeoxyribonuclease IX, at 1,397,702 to 1,398,556 _RS06075 LRK53_RS06080: LRK53_RS06080 - nitroreductase, at 1,398,604 to 1,399,173 _RS06080 LRK53_RS06085: LRK53_RS06085 - cytidine deaminase, at 1,399,235 to 1,399,651 _RS06085 LRK53_RS06090: LRK53_RS06090 - NAD(P) transhydrogenase subunit alpha, at 1,399,777 to 1,400,880 _RS06090 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1397.604 kb on - strandat 1397.612 kb on - strandat 1397.683 kb on + strandat 1397.859 kb on + strand, within LRK53_RS06075at 1397.860 kb on - strand, within LRK53_RS06075at 1398.060 kb on + strand, within LRK53_RS06075at 1398.060 kb on + strand, within LRK53_RS06075at 1398.061 kb on - strand, within LRK53_RS06075at 1398.061 kb on - strand, within LRK53_RS06075at 1398.061 kb on - strand, within LRK53_RS06075at 1398.122 kb on + strand, within LRK53_RS06075at 1398.123 kb on - strand, within LRK53_RS06075at 1398.135 kb on + strand, within LRK53_RS06075at 1398.135 kb on + strand, within LRK53_RS06075at 1398.136 kb on - strand, within LRK53_RS06075at 1398.136 kb on - strand, within LRK53_RS06075at 1398.136 kb on - strand, within LRK53_RS06075at 1398.366 kb on + strand, within LRK53_RS06075at 1398.366 kb on + strand, within LRK53_RS06075at 1398.367 kb on - strand, within LRK53_RS06075at 1398.367 kb on - strand, within LRK53_RS06075at 1398.375 kb on + strand, within LRK53_RS06075at 1398.375 kb on + strand, within LRK53_RS06075at 1398.376 kb on - strand, within LRK53_RS06075at 1398.552 kb on + strandat 1398.552 kb on + strandat 1398.552 kb on + strandat 1398.552 kb on + strandat 1398.553 kb on - strandat 1398.553 kb on - strandat 1398.553 kb on - strandat 1398.553 kb on - strandat 1398.747 kb on - strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.791 kb on + strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.792 kb on - strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.812 kb on + strand, within LRK53_RS06080at 1398.813 kb on - strand, within LRK53_RS06080at 1398.813 kb on - strand, within LRK53_RS06080at 1398.813 kb on - strand, within LRK53_RS06080at 1398.813 kb on - strand, within LRK53_RS06080at 1398.813 kb on - strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.909 kb on + strand, within LRK53_RS06080at 1398.910 kb on + strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.910 kb on - strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.911 kb on + strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1398.912 kb on - strand, within LRK53_RS06080at 1399.181 kb on + strandat 1399.181 kb on + strandat 1399.181 kb on + strandat 1399.182 kb on - strandat 1399.206 kb on + strandat 1399.494 kb on + strand, within LRK53_RS06085at 1399.494 kb on + strand, within LRK53_RS06085at 1399.494 kb on + strand, within LRK53_RS06085at 1399.494 kb on + strand, within LRK53_RS06085at 1399.495 kb on - strand, within LRK53_RS06085at 1399.495 kb on - strand, within LRK53_RS06085at 1399.495 kb on - strand, within LRK53_RS06085at 1399.495 kb on - strand, within LRK53_RS06085at 1399.576 kb on - strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.584 kb on + strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.585 kb on - strand, within LRK53_RS06085at 1399.700 kb on + strandat 1399.700 kb on + strandat 1399.700 kb on + strandat 1399.701 kb on - strandat 1399.701 kb on - strandat 1399.701 kb on - strandat 1399.701 kb on - strandat 1399.701 kb on - strandat 1399.742 kb on + strandat 1399.791 kb on - strandat 1399.791 kb on - strandat 1399.930 kb on + strand, within LRK53_RS06090at 1399.930 kb on + strand, within LRK53_RS06090at 1399.930 kb on + strand, within LRK53_RS06090at 1399.930 kb on + strand, within LRK53_RS06090at 1399.930 kb on + strand, within LRK53_RS06090at 1399.930 kb on + strand, within LRK53_RS06090at 1399.930 kb on + strand, within LRK53_RS06090at 1399.931 kb on - strand, within LRK53_RS06090at 1400.065 kb on + strand, within LRK53_RS06090

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,397,604 - +0.4
1,397,612 - +0.1
1,397,683 + -1.3
1,397,859 + LRK53_RS06075 0.18 -0.3
1,397,860 - LRK53_RS06075 0.18 -1.8
1,398,060 + LRK53_RS06075 0.42 -0.1
1,398,060 + LRK53_RS06075 0.42 -2.7
1,398,061 - LRK53_RS06075 0.42 -0.2
1,398,061 - LRK53_RS06075 0.42 +0.3
1,398,061 - LRK53_RS06075 0.42 +0.8
1,398,122 + LRK53_RS06075 0.49 +0.3
1,398,123 - LRK53_RS06075 0.49 +0.8
1,398,135 + LRK53_RS06075 0.51 -0.9
1,398,135 + LRK53_RS06075 0.51 -1.7
1,398,136 - LRK53_RS06075 0.51 -1.7
1,398,136 - LRK53_RS06075 0.51 -2.7
1,398,136 - LRK53_RS06075 0.51 -1.3
1,398,366 + LRK53_RS06075 0.78 -2.0
1,398,366 + LRK53_RS06075 0.78 -2.0
1,398,367 - LRK53_RS06075 0.78 -0.3
1,398,367 - LRK53_RS06075 0.78 +0.8
1,398,375 + LRK53_RS06075 0.79 -0.9
1,398,375 + LRK53_RS06075 0.79 +0.0
1,398,376 - LRK53_RS06075 0.79 -0.5
1,398,552 + -2.7
1,398,552 + -0.2
1,398,552 + +0.4
1,398,552 + -0.2
1,398,553 - -1.5
1,398,553 - +0.2
1,398,553 - -0.7
1,398,553 - -0.2
1,398,747 - LRK53_RS06080 0.25 +1.4
1,398,791 + LRK53_RS06080 0.33 +0.8
1,398,791 + LRK53_RS06080 0.33 +0.2
1,398,791 + LRK53_RS06080 0.33 -0.2
1,398,791 + LRK53_RS06080 0.33 -0.8
1,398,791 + LRK53_RS06080 0.33 -0.5
1,398,791 + LRK53_RS06080 0.33 +2.1
1,398,791 + LRK53_RS06080 0.33 -0.0
1,398,791 + LRK53_RS06080 0.33 -0.2
1,398,791 + LRK53_RS06080 0.33 -0.8
1,398,791 + LRK53_RS06080 0.33 +1.8
1,398,791 + LRK53_RS06080 0.33 +0.1
1,398,791 + LRK53_RS06080 0.33 +0.5
1,398,791 + LRK53_RS06080 0.33 -1.0
1,398,791 + LRK53_RS06080 0.33 +0.4
1,398,792 - LRK53_RS06080 0.33 -0.2
1,398,792 - LRK53_RS06080 0.33 -0.6
1,398,792 - LRK53_RS06080 0.33 -0.4
1,398,792 - LRK53_RS06080 0.33 +0.8
1,398,792 - LRK53_RS06080 0.33 +0.6
1,398,792 - LRK53_RS06080 0.33 +1.3
1,398,792 - LRK53_RS06080 0.33 -0.0
1,398,792 - LRK53_RS06080 0.33 +0.4
1,398,792 - LRK53_RS06080 0.33 -0.7
1,398,792 - LRK53_RS06080 0.33 -0.2
1,398,792 - LRK53_RS06080 0.33 -0.2
1,398,812 + LRK53_RS06080 0.36 +0.8
1,398,812 + LRK53_RS06080 0.36 -0.8
1,398,812 + LRK53_RS06080 0.36 -0.0
1,398,812 + LRK53_RS06080 0.36 +1.1
1,398,812 + LRK53_RS06080 0.36 +0.3
1,398,812 + LRK53_RS06080 0.36 -0.2
1,398,812 + LRK53_RS06080 0.36 -1.0
1,398,812 + LRK53_RS06080 0.36 -0.5
1,398,812 + LRK53_RS06080 0.36 -0.0
1,398,813 - LRK53_RS06080 0.37 -0.5
1,398,813 - LRK53_RS06080 0.37 +0.0
1,398,813 - LRK53_RS06080 0.37 -0.5
1,398,813 - LRK53_RS06080 0.37 -0.5
1,398,813 - LRK53_RS06080 0.37 +0.8
1,398,909 + LRK53_RS06080 0.54 -0.5
1,398,909 + LRK53_RS06080 0.54 +1.0
1,398,909 + LRK53_RS06080 0.54 -0.8
1,398,909 + LRK53_RS06080 0.54 +1.3
1,398,909 + LRK53_RS06080 0.54 +0.8
1,398,909 + LRK53_RS06080 0.54 -0.7
1,398,909 + LRK53_RS06080 0.54 +1.3
1,398,909 + LRK53_RS06080 0.54 -0.2
1,398,909 + LRK53_RS06080 0.54 +0.6
1,398,909 + LRK53_RS06080 0.54 -0.4
1,398,909 + LRK53_RS06080 0.54 -2.7
1,398,910 + LRK53_RS06080 0.54 +0.2
1,398,910 - LRK53_RS06080 0.54 +1.7
1,398,910 - LRK53_RS06080 0.54 -0.4
1,398,910 - LRK53_RS06080 0.54 -0.7
1,398,910 - LRK53_RS06080 0.54 +1.3
1,398,910 - LRK53_RS06080 0.54 -1.2
1,398,910 - LRK53_RS06080 0.54 -0.2
1,398,910 - LRK53_RS06080 0.54 -0.6
1,398,910 - LRK53_RS06080 0.54 -0.4
1,398,910 - LRK53_RS06080 0.54 +0.8
1,398,911 + LRK53_RS06080 0.54 +0.0
1,398,911 + LRK53_RS06080 0.54 -1.0
1,398,911 + LRK53_RS06080 0.54 -1.5
1,398,911 + LRK53_RS06080 0.54 -0.2
1,398,911 + LRK53_RS06080 0.54 +0.8
1,398,911 + LRK53_RS06080 0.54 -0.4
1,398,911 + LRK53_RS06080 0.54 -2.2
1,398,911 + LRK53_RS06080 0.54 -1.3
1,398,912 - LRK53_RS06080 0.54 -0.2
1,398,912 - LRK53_RS06080 0.54 +0.2
1,398,912 - LRK53_RS06080 0.54 -0.4
1,398,912 - LRK53_RS06080 0.54 +1.2
1,398,912 - LRK53_RS06080 0.54 -1.7
1,398,912 - LRK53_RS06080 0.54 +0.3
1,398,912 - LRK53_RS06080 0.54 -0.7
1,398,912 - LRK53_RS06080 0.54 +0.1
1,398,912 - LRK53_RS06080 0.54 +0.2
1,398,912 - LRK53_RS06080 0.54 -1.4
1,398,912 - LRK53_RS06080 0.54 +2.4
1,398,912 - LRK53_RS06080 0.54 -2.0
1,398,912 - LRK53_RS06080 0.54 -0.8
1,399,181 + -0.2
1,399,181 + +1.3
1,399,181 + -0.7
1,399,182 - +0.4
1,399,206 + +0.6
1,399,494 + LRK53_RS06085 0.62 -1.7
1,399,494 + LRK53_RS06085 0.62 -0.2
1,399,494 + LRK53_RS06085 0.62 +0.0
1,399,494 + LRK53_RS06085 0.62 -1.0
1,399,495 - LRK53_RS06085 0.62 -0.2
1,399,495 - LRK53_RS06085 0.62 -1.5
1,399,495 - LRK53_RS06085 0.62 -1.5
1,399,495 - LRK53_RS06085 0.62 +0.1
1,399,576 - LRK53_RS06085 0.82 -1.2
1,399,584 + LRK53_RS06085 0.84 -0.8
1,399,584 + LRK53_RS06085 0.84 +0.5
1,399,584 + LRK53_RS06085 0.84 +0.4
1,399,584 + LRK53_RS06085 0.84 +0.8
1,399,584 + LRK53_RS06085 0.84 -0.5
1,399,584 + LRK53_RS06085 0.84 +0.2
1,399,584 + LRK53_RS06085 0.84 +0.4
1,399,584 + LRK53_RS06085 0.84 -0.6
1,399,584 + LRK53_RS06085 0.84 +0.5
1,399,584 + LRK53_RS06085 0.84 -0.5
1,399,584 + LRK53_RS06085 0.84 +0.2
1,399,585 - LRK53_RS06085 0.84 +0.9
1,399,585 - LRK53_RS06085 0.84 +0.8
1,399,585 - LRK53_RS06085 0.84 -0.8
1,399,585 - LRK53_RS06085 0.84 -0.6
1,399,585 - LRK53_RS06085 0.84 +0.8
1,399,585 - LRK53_RS06085 0.84 -1.7
1,399,585 - LRK53_RS06085 0.84 -0.2
1,399,585 - LRK53_RS06085 0.84 -3.0
1,399,585 - LRK53_RS06085 0.84 -0.1
1,399,585 - LRK53_RS06085 0.84 +0.8
1,399,585 - LRK53_RS06085 0.84 -1.5
1,399,700 + -1.0
1,399,700 + -1.4
1,399,700 + +1.4
1,399,701 - +0.1
1,399,701 - -1.0
1,399,701 - -0.2
1,399,701 - +0.3
1,399,701 - -0.4
1,399,742 + +0.8
1,399,791 - +2.8
1,399,791 - -0.2
1,399,930 + LRK53_RS06090 0.14 +1.4
1,399,930 + LRK53_RS06090 0.14 -0.5
1,399,930 + LRK53_RS06090 0.14 +2.2
1,399,930 + LRK53_RS06090 0.14 -0.2
1,399,930 + LRK53_RS06090 0.14 +0.0
1,399,930 + LRK53_RS06090 0.14 -0.2
1,399,930 + LRK53_RS06090 0.14 +0.3
1,399,931 - LRK53_RS06090 0.14 -1.1
1,400,065 + LRK53_RS06090 0.26 -0.2

Or see this region's nucleotide sequence