Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01920 and LRK53_RS01925 are separated by 84 nucleotides LRK53_RS01925 and LRK53_RS01930 are separated by 386 nucleotides LRK53_RS01930 and LRK53_RS01935 are separated by 11 nucleotides LRK53_RS01935 and LRK53_RS01940 are separated by 46 nucleotides LRK53_RS01940 and LRK53_RS01945 overlap by 14 nucleotides
LRK53_RS01920: LRK53_RS01920 - regulatory signaling modulator protein AmpE, at 449,489 to 450,358
_RS01920
LRK53_RS01925: LRK53_RS01925 - hypothetical protein, at 450,443 to 450,814
_RS01925
LRK53_RS01930: LRK53_RS01930 - NAD(+) diphosphatase, at 451,201 to 452,172
_RS01930
LRK53_RS01935: LRK53_RS01935 - iron-sulfur cluster insertion protein ErpA, at 452,184 to 452,552
_RS01935
LRK53_RS01940: LRK53_RS01940 - polymer-forming cytoskeletal protein, at 452,599 to 453,027
_RS01940
LRK53_RS01945: LRK53_RS01945 - hypothetical protein, at 453,014 to 453,769
_RS01945
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 450.242 kb on - strand, within LRK53_RS01920 at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.676 kb on + strand, within LRK53_RS01925 at 450.677 kb on - strand, within LRK53_RS01925 at 450.677 kb on - strand, within LRK53_RS01925 at 450.974 kb on + strand at 451.109 kb on + strand at 451.109 kb on + strand at 451.277 kb on + strand at 451.277 kb on + strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.463 kb on + strand, within LRK53_RS01930 at 451.463 kb on + strand, within LRK53_RS01930 at 451.565 kb on + strand, within LRK53_RS01930 at 451.566 kb on - strand, within LRK53_RS01930 at 451.566 kb on - strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.782 kb on - strand, within LRK53_RS01930 at 451.782 kb on - strand, within LRK53_RS01930 at 451.919 kb on + strand, within LRK53_RS01930 at 451.919 kb on + strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.920 kb on - strand, within LRK53_RS01930 at 451.927 kb on - strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.045 kb on + strand, within LRK53_RS01930 at 452.046 kb on - strand, within LRK53_RS01930 at 452.046 kb on - strand, within LRK53_RS01930 at 452.534 kb on + strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.582 kb on + strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.583 kb on - strand at 452.592 kb on + strand at 452.592 kb on + strand at 452.592 kb on + strand at 452.720 kb on + strand, within LRK53_RS01940 at 452.721 kb on - strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.773 kb on + strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.774 kb on - strand, within LRK53_RS01940 at 452.863 kb on + strand, within LRK53_RS01940 at 452.863 kb on + strand, within LRK53_RS01940 at 452.864 kb on - strand, within LRK53_RS01940 at 453.015 kb on + strand at 453.015 kb on + strand at 453.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 450,242 - LRK53_RS01920 0.87 -0.8 450,392 + -1.3 450,392 + -2.3 450,392 + -0.8 450,392 + +0.2 450,392 + -2.2 450,392 + -0.1 450,392 + -0.6 450,392 + -3.0 450,392 + -0.7 450,392 + -0.2 450,392 + -0.4 450,392 + -0.8 450,392 + +1.0 450,392 + +1.0 450,392 + +1.0 450,392 + +1.0 450,393 - -0.3 450,393 - -1.9 450,393 - -2.6 450,393 - +0.6 450,393 - -0.9 450,393 - -1.2 450,393 - -1.2 450,393 - -2.4 450,393 - +0.8 450,393 - -0.3 450,393 - -1.0 450,393 - -0.8 450,393 - -0.2 450,393 - -0.7 450,393 - -0.8 450,600 + LRK53_RS01925 0.42 +0.1 450,600 + LRK53_RS01925 0.42 +0.4 450,600 + LRK53_RS01925 0.42 -0.3 450,600 + LRK53_RS01925 0.42 +0.7 450,600 + LRK53_RS01925 0.42 +0.2 450,600 + LRK53_RS01925 0.42 -1.0 450,601 - LRK53_RS01925 0.42 -0.1 450,601 - LRK53_RS01925 0.42 +0.4 450,601 - LRK53_RS01925 0.42 -0.6 450,601 - LRK53_RS01925 0.42 -0.2 450,601 - LRK53_RS01925 0.42 +0.0 450,601 - LRK53_RS01925 0.42 -1.0 450,601 - LRK53_RS01925 0.42 +1.0 450,601 - LRK53_RS01925 0.42 -0.8 450,601 - LRK53_RS01925 0.42 +0.4 450,601 - LRK53_RS01925 0.42 +1.3 450,676 + LRK53_RS01925 0.63 -1.5 450,677 - LRK53_RS01925 0.63 +1.0 450,677 - LRK53_RS01925 0.63 -0.3 450,974 + +0.8 451,109 + -0.4 451,109 + -0.2 451,277 + -0.3 451,277 + -2.3 451,278 - -0.2 451,278 - -0.1 451,278 - +0.4 451,278 - +0.0 451,278 - -0.5 451,278 - +0.0 451,463 + LRK53_RS01930 0.27 +0.3 451,463 + LRK53_RS01930 0.27 +0.1 451,565 + LRK53_RS01930 0.37 -0.6 451,566 - LRK53_RS01930 0.38 -2.8 451,566 - LRK53_RS01930 0.38 +0.5 451,781 + LRK53_RS01930 0.60 +0.2 451,781 + LRK53_RS01930 0.60 -0.8 451,781 + LRK53_RS01930 0.60 -0.3 451,781 + LRK53_RS01930 0.60 -0.6 451,781 + LRK53_RS01930 0.60 +0.7 451,782 - LRK53_RS01930 0.60 +0.3 451,782 - LRK53_RS01930 0.60 +1.0 451,919 + LRK53_RS01930 0.74 -0.1 451,919 + LRK53_RS01930 0.74 -1.8 451,920 - LRK53_RS01930 0.74 -0.1 451,920 - LRK53_RS01930 0.74 +0.4 451,920 - LRK53_RS01930 0.74 -1.8 451,920 - LRK53_RS01930 0.74 -0.3 451,920 - LRK53_RS01930 0.74 +3.0 451,927 - LRK53_RS01930 0.75 -0.3 452,045 + LRK53_RS01930 0.87 -0.4 452,045 + LRK53_RS01930 0.87 -0.3 452,045 + LRK53_RS01930 0.87 -1.0 452,045 + LRK53_RS01930 0.87 -0.1 452,045 + LRK53_RS01930 0.87 -0.7 452,045 + LRK53_RS01930 0.87 -0.4 452,045 + LRK53_RS01930 0.87 -1.3 452,045 + LRK53_RS01930 0.87 -2.0 452,046 - LRK53_RS01930 0.87 +0.1 452,046 - LRK53_RS01930 0.87 +0.0 452,534 + -2.2 452,535 - -2.3 452,535 - -1.3 452,582 + +2.0 452,582 + -1.1 452,582 + +0.6 452,582 + +0.7 452,582 + -1.5 452,582 + +0.5 452,582 + -0.1 452,582 + -0.6 452,582 + -1.0 452,582 + +0.0 452,582 + +0.0 452,582 + +1.0 452,583 - -1.2 452,583 - -0.2 452,583 - -0.6 452,583 - +3.0 452,583 - -2.2 452,583 - +1.0 452,583 - +1.2 452,583 - -1.5 452,592 + -0.1 452,592 + -0.9 452,592 + -2.0 452,720 + LRK53_RS01940 0.28 -0.5 452,721 - LRK53_RS01940 0.28 -0.6 452,773 + LRK53_RS01940 0.41 +1.6 452,773 + LRK53_RS01940 0.41 -1.8 452,773 + LRK53_RS01940 0.41 -2.6 452,773 + LRK53_RS01940 0.41 +0.0 452,773 + LRK53_RS01940 0.41 -0.1 452,773 + LRK53_RS01940 0.41 -1.0 452,773 + LRK53_RS01940 0.41 -0.4 452,773 + LRK53_RS01940 0.41 -0.6 452,773 + LRK53_RS01940 0.41 -1.5 452,773 + LRK53_RS01940 0.41 -0.9 452,773 + LRK53_RS01940 0.41 +1.0 452,773 + LRK53_RS01940 0.41 -0.1 452,773 + LRK53_RS01940 0.41 -1.0 452,774 - LRK53_RS01940 0.41 -1.0 452,774 - LRK53_RS01940 0.41 +1.0 452,774 - LRK53_RS01940 0.41 -0.3 452,774 - LRK53_RS01940 0.41 -1.3 452,774 - LRK53_RS01940 0.41 +1.7 452,774 - LRK53_RS01940 0.41 -1.2 452,774 - LRK53_RS01940 0.41 -0.9 452,774 - LRK53_RS01940 0.41 -0.2 452,774 - LRK53_RS01940 0.41 -0.3 452,863 + LRK53_RS01940 0.62 +0.0 452,863 + LRK53_RS01940 0.62 -0.5 452,864 - LRK53_RS01940 0.62 +0.0 453,015 + -0.2 453,015 + +0.7 453,016 - +0.6
Or see this region's nucleotide sequence