Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS19325

Experiment: alginate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS19315 and ABZR88_RS19320 are separated by 3 nucleotidesABZR88_RS19320 and ABZR88_RS19325 are separated by 3 nucleotidesABZR88_RS19325 and ABZR88_RS19330 overlap by 11 nucleotidesABZR88_RS19330 and ABZR88_RS19335 are separated by 16 nucleotides ABZR88_RS19315: ABZR88_RS19315 - ABC transporter permease, at 4,704,876 to 4,706,153 _RS19315 ABZR88_RS19320: ABZR88_RS19320 - ABC transporter ATP-binding protein, at 4,706,157 to 4,706,900 _RS19320 ABZR88_RS19325: ABZR88_RS19325 - BtrH N-terminal domain-containing protein, at 4,706,904 to 4,707,917 _RS19325 ABZR88_RS19330: ABZR88_RS19330 - hypothetical protein, at 4,707,907 to 4,708,314 _RS19330 ABZR88_RS19335: ABZR88_RS19335 - beta-ketoacyl-ACP synthase III, at 4,708,331 to 4,709,479 _RS19335 Position (kb) 4706 4707 4708Strain fitness (log2 ratio) -2 -1 0 1at 4706.043 kb on - strandat 4706.128 kb on - strandat 4706.143 kb on - strandat 4706.271 kb on + strand, within ABZR88_RS19320at 4706.373 kb on - strand, within ABZR88_RS19320at 4706.397 kb on + strand, within ABZR88_RS19320at 4706.397 kb on + strand, within ABZR88_RS19320at 4706.844 kb on - strandat 4706.879 kb on + strandat 4706.912 kb on + strandat 4706.946 kb on + strandat 4707.017 kb on - strand, within ABZR88_RS19325at 4707.139 kb on + strand, within ABZR88_RS19325at 4707.502 kb on + strand, within ABZR88_RS19325at 4707.707 kb on + strand, within ABZR88_RS19325at 4707.787 kb on + strand, within ABZR88_RS19325at 4707.991 kb on + strand, within ABZR88_RS19330at 4708.226 kb on + strand, within ABZR88_RS19330at 4708.227 kb on - strand, within ABZR88_RS19330at 4708.445 kb on + strandat 4708.702 kb on + strand, within ABZR88_RS19335at 4708.703 kb on - strand, within ABZR88_RS19335at 4708.780 kb on + strand, within ABZR88_RS19335at 4708.835 kb on - strand, within ABZR88_RS19335at 4708.835 kb on - strand, within ABZR88_RS19335

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Per-strain Table

Position Strand Gene LocusTag Fraction alginate (C)
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4,706,043 - -0.2
4,706,128 - -0.5
4,706,143 - +0.1
4,706,271 + ABZR88_RS19320 0.15 -0.7
4,706,373 - ABZR88_RS19320 0.29 -0.3
4,706,397 + ABZR88_RS19320 0.32 -0.7
4,706,397 + ABZR88_RS19320 0.32 -0.9
4,706,844 - +0.4
4,706,879 + -1.9
4,706,912 + -2.0
4,706,946 + -0.1
4,707,017 - ABZR88_RS19325 0.11 -1.0
4,707,139 + ABZR88_RS19325 0.23 -1.2
4,707,502 + ABZR88_RS19325 0.59 -0.7
4,707,707 + ABZR88_RS19325 0.79 -1.5
4,707,787 + ABZR88_RS19325 0.87 +1.3
4,707,991 + ABZR88_RS19330 0.21 +0.0
4,708,226 + ABZR88_RS19330 0.78 -0.1
4,708,227 - ABZR88_RS19330 0.78 +0.0
4,708,445 + -0.1
4,708,702 + ABZR88_RS19335 0.32 +0.1
4,708,703 - ABZR88_RS19335 0.32 -1.1
4,708,780 + ABZR88_RS19335 0.39 -0.4
4,708,835 - ABZR88_RS19335 0.44 -0.0
4,708,835 - ABZR88_RS19335 0.44 +0.0

Or see this region's nucleotide sequence