Experiment: alginate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19315 and ABZR88_RS19320 are separated by 3 nucleotides ABZR88_RS19320 and ABZR88_RS19325 are separated by 3 nucleotides ABZR88_RS19325 and ABZR88_RS19330 overlap by 11 nucleotides ABZR88_RS19330 and ABZR88_RS19335 are separated by 16 nucleotides
ABZR88_RS19315: ABZR88_RS19315 - ABC transporter permease, at 4,704,876 to 4,706,153
_RS19315
ABZR88_RS19320: ABZR88_RS19320 - ABC transporter ATP-binding protein, at 4,706,157 to 4,706,900
_RS19320
ABZR88_RS19325: ABZR88_RS19325 - BtrH N-terminal domain-containing protein, at 4,706,904 to 4,707,917
_RS19325
ABZR88_RS19330: ABZR88_RS19330 - hypothetical protein, at 4,707,907 to 4,708,314
_RS19330
ABZR88_RS19335: ABZR88_RS19335 - beta-ketoacyl-ACP synthase III, at 4,708,331 to 4,709,479
_RS19335
Position (kb)
4706
4707
4708 Strain fitness (log2 ratio)
-2
-1
0
1 at 4706.043 kb on - strand at 4706.128 kb on - strand at 4706.143 kb on - strand at 4706.271 kb on + strand, within ABZR88_RS19320 at 4706.373 kb on - strand, within ABZR88_RS19320 at 4706.397 kb on + strand, within ABZR88_RS19320 at 4706.397 kb on + strand, within ABZR88_RS19320 at 4706.844 kb on - strand at 4706.879 kb on + strand at 4706.912 kb on + strand at 4706.946 kb on + strand at 4707.017 kb on - strand, within ABZR88_RS19325 at 4707.139 kb on + strand, within ABZR88_RS19325 at 4707.502 kb on + strand, within ABZR88_RS19325 at 4707.707 kb on + strand, within ABZR88_RS19325 at 4707.787 kb on + strand, within ABZR88_RS19325 at 4707.991 kb on + strand, within ABZR88_RS19330 at 4708.226 kb on + strand, within ABZR88_RS19330 at 4708.227 kb on - strand, within ABZR88_RS19330 at 4708.445 kb on + strand at 4708.702 kb on + strand, within ABZR88_RS19335 at 4708.703 kb on - strand, within ABZR88_RS19335 at 4708.780 kb on + strand, within ABZR88_RS19335 at 4708.835 kb on - strand, within ABZR88_RS19335 at 4708.835 kb on - strand, within ABZR88_RS19335
Per-strain Table
Position Strand Gene LocusTag Fraction alginate (C) remove 4,706,043 - -0.2 4,706,128 - -0.5 4,706,143 - +0.1 4,706,271 + ABZR88_RS19320 0.15 -0.7 4,706,373 - ABZR88_RS19320 0.29 -0.3 4,706,397 + ABZR88_RS19320 0.32 -0.7 4,706,397 + ABZR88_RS19320 0.32 -0.9 4,706,844 - +0.4 4,706,879 + -1.9 4,706,912 + -2.0 4,706,946 + -0.1 4,707,017 - ABZR88_RS19325 0.11 -1.0 4,707,139 + ABZR88_RS19325 0.23 -1.2 4,707,502 + ABZR88_RS19325 0.59 -0.7 4,707,707 + ABZR88_RS19325 0.79 -1.5 4,707,787 + ABZR88_RS19325 0.87 +1.3 4,707,991 + ABZR88_RS19330 0.21 +0.0 4,708,226 + ABZR88_RS19330 0.78 -0.1 4,708,227 - ABZR88_RS19330 0.78 +0.0 4,708,445 + -0.1 4,708,702 + ABZR88_RS19335 0.32 +0.1 4,708,703 - ABZR88_RS19335 0.32 -1.1 4,708,780 + ABZR88_RS19335 0.39 -0.4 4,708,835 - ABZR88_RS19335 0.44 -0.0 4,708,835 - ABZR88_RS19335 0.44 +0.0
Or see this region's nucleotide sequence