Experiment: alginate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19075 and ABZR88_RS19080 are separated by 238 nucleotides ABZR88_RS19080 and ABZR88_RS19085 are separated by 11 nucleotides ABZR88_RS19085 and ABZR88_RS19090 are separated by 61 nucleotides ABZR88_RS19090 and ABZR88_RS19095 are separated by 191 nucleotides
ABZR88_RS19075: ABZR88_RS19075 - LysR substrate-binding domain-containing protein, at 4,659,183 to 4,660,076
_RS19075
ABZR88_RS19080: ABZR88_RS19080 - hypothetical protein, at 4,660,315 to 4,660,734
_RS19080
ABZR88_RS19085: ABZR88_RS19085 - phage holin family protein, at 4,660,746 to 4,661,102
_RS19085
ABZR88_RS19090: ABZR88_RS19090 - YtxH domain-containing protein, at 4,661,164 to 4,661,430
_RS19090
ABZR88_RS19095: ABZR88_RS19095 - AI-2E family transporter, at 4,661,622 to 4,662,671
_RS19095
Position (kb) 4660
4661
4662 Strain fitness (log2 ratio) -1
0
1
2 at 4659.978 kb on - strand, within ABZR88_RS19075 at 4659.981 kb on - strand, within ABZR88_RS19075 at 4660.076 kb on + strand at 4660.140 kb on + strand at 4660.548 kb on + strand, within ABZR88_RS19080 at 4660.638 kb on + strand, within ABZR88_RS19080 at 4660.716 kb on + strand at 4660.717 kb on - strand at 4660.742 kb on + strand at 4660.743 kb on - strand at 4660.815 kb on - strand, within ABZR88_RS19085 at 4660.932 kb on + strand, within ABZR88_RS19085 at 4660.953 kb on - strand, within ABZR88_RS19085 at 4660.958 kb on + strand, within ABZR88_RS19085 at 4661.103 kb on - strand at 4661.118 kb on - strand at 4661.160 kb on - strand at 4661.190 kb on - strand at 4661.548 kb on - strand at 4661.758 kb on - strand, within ABZR88_RS19095 at 4661.766 kb on - strand, within ABZR88_RS19095 at 4661.823 kb on - strand, within ABZR88_RS19095 at 4661.872 kb on + strand, within ABZR88_RS19095 at 4661.872 kb on + strand, within ABZR88_RS19095
Per-strain Table
Position Strand Gene LocusTag Fraction alginate (C) remove 4,659,978 - ABZR88_RS19075 0.89 -0.2 4,659,981 - ABZR88_RS19075 0.89 +0.2 4,660,076 + +0.1 4,660,140 + -1.1 4,660,548 + ABZR88_RS19080 0.55 -1.0 4,660,638 + ABZR88_RS19080 0.77 -0.0 4,660,716 + -0.5 4,660,717 - -0.6 4,660,742 + +1.0 4,660,743 - +0.0 4,660,815 - ABZR88_RS19085 0.19 -1.3 4,660,932 + ABZR88_RS19085 0.52 -1.3 4,660,953 - ABZR88_RS19085 0.58 +0.3 4,660,958 + ABZR88_RS19085 0.59 -1.3 4,661,103 - -0.0 4,661,118 - +0.7 4,661,160 - +1.9 4,661,190 - -0.3 4,661,548 - +0.1 4,661,758 - ABZR88_RS19095 0.13 +1.7 4,661,766 - ABZR88_RS19095 0.14 -0.4 4,661,823 - ABZR88_RS19095 0.19 -0.4 4,661,872 + ABZR88_RS19095 0.24 -0.2 4,661,872 + ABZR88_RS19095 0.24 +0.3
Or see this region's nucleotide sequence