Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS19070

Experiment: alginate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS19065 and ABZR88_RS19070 are separated by 13 nucleotidesABZR88_RS19070 and ABZR88_RS19075 are separated by 377 nucleotides ABZR88_RS19065: ABZR88_RS19065 - 1-hydroxycarotenoid 3,4-desaturase CrtD, at 4,657,134 to 4,658,603 _RS19065 ABZR88_RS19070: ABZR88_RS19070 - hypothetical protein, at 4,658,617 to 4,658,805 _RS19070 ABZR88_RS19075: ABZR88_RS19075 - LysR substrate-binding domain-containing protein, at 4,659,183 to 4,660,076 _RS19075 Position (kb) 4658 4659Strain fitness (log2 ratio) -2 -1 0 1 2at 4657.779 kb on + strand, within ABZR88_RS19065at 4657.862 kb on + strand, within ABZR88_RS19065at 4657.919 kb on + strand, within ABZR88_RS19065at 4657.920 kb on - strand, within ABZR88_RS19065at 4657.921 kb on + strand, within ABZR88_RS19065at 4657.921 kb on + strand, within ABZR88_RS19065at 4657.922 kb on - strand, within ABZR88_RS19065at 4657.942 kb on + strand, within ABZR88_RS19065at 4658.017 kb on + strand, within ABZR88_RS19065at 4658.227 kb on + strand, within ABZR88_RS19065at 4658.409 kb on + strand, within ABZR88_RS19065at 4658.410 kb on - strand, within ABZR88_RS19065at 4658.414 kb on - strand, within ABZR88_RS19065at 4658.891 kb on - strandat 4658.919 kb on - strandat 4659.438 kb on - strand, within ABZR88_RS19075at 4659.689 kb on + strand, within ABZR88_RS19075at 4659.712 kb on - strand, within ABZR88_RS19075at 4659.744 kb on + strand, within ABZR88_RS19075

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Per-strain Table

Position Strand Gene LocusTag Fraction alginate (C)
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4,657,779 + ABZR88_RS19065 0.44 -2.1
4,657,862 + ABZR88_RS19065 0.50 -1.3
4,657,919 + ABZR88_RS19065 0.53 +0.1
4,657,920 - ABZR88_RS19065 0.53 -0.2
4,657,921 + ABZR88_RS19065 0.54 -0.9
4,657,921 + ABZR88_RS19065 0.54 -0.1
4,657,922 - ABZR88_RS19065 0.54 +0.3
4,657,942 + ABZR88_RS19065 0.55 -0.6
4,658,017 + ABZR88_RS19065 0.60 -0.0
4,658,227 + ABZR88_RS19065 0.74 +2.3
4,658,409 + ABZR88_RS19065 0.87 -1.5
4,658,410 - ABZR88_RS19065 0.87 +0.3
4,658,414 - ABZR88_RS19065 0.87 +0.1
4,658,891 - +0.9
4,658,919 - +1.1
4,659,438 - ABZR88_RS19075 0.29 +1.2
4,659,689 + ABZR88_RS19075 0.57 -0.4
4,659,712 - ABZR88_RS19075 0.59 +1.3
4,659,744 + ABZR88_RS19075 0.63 -0.2

Or see this region's nucleotide sequence