Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16550

Experiment: alginate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16545 and ABZR88_RS16550 are separated by 73 nucleotidesABZR88_RS16550 and ABZR88_RS16555 are separated by 254 nucleotides ABZR88_RS16545: ABZR88_RS16545 - NAD(P)/FAD-dependent oxidoreductase, at 4,058,533 to 4,060,017 _RS16545 ABZR88_RS16550: ABZR88_RS16550 - RNA polymerase sigma factor, at 4,060,091 to 4,060,633 _RS16550 ABZR88_RS16555: ABZR88_RS16555 - UDP-N-acetylmuramate dehydrogenase, at 4,060,888 to 4,061,907 _RS16555 Position (kb) 4060 4061Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4059.380 kb on + strand, within ABZR88_RS16545at 4059.510 kb on + strand, within ABZR88_RS16545at 4059.593 kb on - strand, within ABZR88_RS16545at 4059.853 kb on - strand, within ABZR88_RS16545at 4060.088 kb on + strandat 4060.106 kb on - strandat 4060.233 kb on + strand, within ABZR88_RS16550at 4060.233 kb on + strand, within ABZR88_RS16550at 4060.255 kb on + strand, within ABZR88_RS16550at 4060.269 kb on + strand, within ABZR88_RS16550at 4060.423 kb on - strand, within ABZR88_RS16550at 4060.455 kb on + strand, within ABZR88_RS16550at 4060.458 kb on - strand, within ABZR88_RS16550at 4060.492 kb on + strand, within ABZR88_RS16550at 4060.493 kb on - strand, within ABZR88_RS16550at 4060.497 kb on + strand, within ABZR88_RS16550at 4060.519 kb on + strand, within ABZR88_RS16550at 4060.520 kb on - strand, within ABZR88_RS16550at 4060.522 kb on + strand, within ABZR88_RS16550at 4060.576 kb on - strand, within ABZR88_RS16550at 4060.862 kb on + strandat 4060.868 kb on - strandat 4060.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction alginate (C)
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4,059,380 + ABZR88_RS16545 0.57 -0.3
4,059,510 + ABZR88_RS16545 0.66 -0.3
4,059,593 - ABZR88_RS16545 0.71 -0.5
4,059,853 - ABZR88_RS16545 0.89 -2.0
4,060,088 + +1.1
4,060,106 - +0.2
4,060,233 + ABZR88_RS16550 0.26 -4.5
4,060,233 + ABZR88_RS16550 0.26 -3.0
4,060,255 + ABZR88_RS16550 0.30 -1.9
4,060,269 + ABZR88_RS16550 0.33 -3.8
4,060,423 - ABZR88_RS16550 0.61 -3.7
4,060,455 + ABZR88_RS16550 0.67 -3.3
4,060,458 - ABZR88_RS16550 0.68 -4.4
4,060,492 + ABZR88_RS16550 0.74 -1.2
4,060,493 - ABZR88_RS16550 0.74 -4.1
4,060,497 + ABZR88_RS16550 0.75 -2.8
4,060,519 + ABZR88_RS16550 0.79 +1.2
4,060,520 - ABZR88_RS16550 0.79 -4.0
4,060,522 + ABZR88_RS16550 0.79 -3.8
4,060,576 - ABZR88_RS16550 0.89 -3.6
4,060,862 + +0.7
4,060,868 - -0.2
4,060,904 - +0.5

Or see this region's nucleotide sequence