Experiment: alginate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16545 and ABZR88_RS16550 are separated by 73 nucleotides ABZR88_RS16550 and ABZR88_RS16555 are separated by 254 nucleotides
ABZR88_RS16545: ABZR88_RS16545 - NAD(P)/FAD-dependent oxidoreductase, at 4,058,533 to 4,060,017
_RS16545
ABZR88_RS16550: ABZR88_RS16550 - RNA polymerase sigma factor, at 4,060,091 to 4,060,633
_RS16550
ABZR88_RS16555: ABZR88_RS16555 - UDP-N-acetylmuramate dehydrogenase, at 4,060,888 to 4,061,907
_RS16555
Position (kb)
4060
4061 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4059.380 kb on + strand, within ABZR88_RS16545 at 4059.510 kb on + strand, within ABZR88_RS16545 at 4059.593 kb on - strand, within ABZR88_RS16545 at 4059.853 kb on - strand, within ABZR88_RS16545 at 4060.088 kb on + strand at 4060.106 kb on - strand at 4060.233 kb on + strand, within ABZR88_RS16550 at 4060.233 kb on + strand, within ABZR88_RS16550 at 4060.255 kb on + strand, within ABZR88_RS16550 at 4060.269 kb on + strand, within ABZR88_RS16550 at 4060.423 kb on - strand, within ABZR88_RS16550 at 4060.455 kb on + strand, within ABZR88_RS16550 at 4060.458 kb on - strand, within ABZR88_RS16550 at 4060.492 kb on + strand, within ABZR88_RS16550 at 4060.493 kb on - strand, within ABZR88_RS16550 at 4060.497 kb on + strand, within ABZR88_RS16550 at 4060.519 kb on + strand, within ABZR88_RS16550 at 4060.520 kb on - strand, within ABZR88_RS16550 at 4060.522 kb on + strand, within ABZR88_RS16550 at 4060.576 kb on - strand, within ABZR88_RS16550 at 4060.862 kb on + strand at 4060.868 kb on - strand at 4060.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction alginate (C) remove 4,059,380 + ABZR88_RS16545 0.57 -0.3 4,059,510 + ABZR88_RS16545 0.66 -0.3 4,059,593 - ABZR88_RS16545 0.71 -0.5 4,059,853 - ABZR88_RS16545 0.89 -2.0 4,060,088 + +1.1 4,060,106 - +0.2 4,060,233 + ABZR88_RS16550 0.26 -4.5 4,060,233 + ABZR88_RS16550 0.26 -3.0 4,060,255 + ABZR88_RS16550 0.30 -1.9 4,060,269 + ABZR88_RS16550 0.33 -3.8 4,060,423 - ABZR88_RS16550 0.61 -3.7 4,060,455 + ABZR88_RS16550 0.67 -3.3 4,060,458 - ABZR88_RS16550 0.68 -4.4 4,060,492 + ABZR88_RS16550 0.74 -1.2 4,060,493 - ABZR88_RS16550 0.74 -4.1 4,060,497 + ABZR88_RS16550 0.75 -2.8 4,060,519 + ABZR88_RS16550 0.79 +1.2 4,060,520 - ABZR88_RS16550 0.79 -4.0 4,060,522 + ABZR88_RS16550 0.79 -3.8 4,060,576 - ABZR88_RS16550 0.89 -3.6 4,060,862 + +0.7 4,060,868 - -0.2 4,060,904 - +0.5
Or see this region's nucleotide sequence