Experiment: alginate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS15090 and ABZR88_RS15095 are separated by 96 nucleotides ABZR88_RS15095 and ABZR88_RS15100 are separated by 145 nucleotides ABZR88_RS15100 and ABZR88_RS15105 are separated by 78 nucleotides ABZR88_RS15105 and ABZR88_RS15110 are separated by 139 nucleotides
ABZR88_RS15090: ABZR88_RS15090 - hypothetical protein, at 3,741,482 to 3,742,234
_RS15090
ABZR88_RS15095: ABZR88_RS15095 - hypothetical protein, at 3,742,331 to 3,742,945
_RS15095
ABZR88_RS15100: ABZR88_RS15100 - cold-shock protein, at 3,743,091 to 3,743,282
_RS15100
ABZR88_RS15105: ABZR88_RS15105 - cold-shock protein, at 3,743,361 to 3,743,813
_RS15105
ABZR88_RS15110: ABZR88_RS15110 - CehA/McbA family metallohydrolase, at 3,743,953 to 3,745,137
_RS15110
Position (kb)
3743
3744 Strain fitness (log2 ratio)
-1
0
1 at 3742.104 kb on - strand, within ABZR88_RS15090 at 3742.146 kb on - strand, within ABZR88_RS15090 at 3742.199 kb on - strand at 3742.245 kb on - strand at 3742.640 kb on - strand, within ABZR88_RS15095 at 3742.710 kb on + strand, within ABZR88_RS15095 at 3742.941 kb on + strand at 3743.057 kb on + strand at 3743.067 kb on + strand at 3743.222 kb on - strand, within ABZR88_RS15100 at 3743.227 kb on - strand, within ABZR88_RS15100 at 3743.280 kb on + strand at 3743.287 kb on + strand at 3743.289 kb on + strand at 3743.298 kb on + strand at 3743.576 kb on + strand, within ABZR88_RS15105 at 3743.758 kb on - strand, within ABZR88_RS15105 at 3743.849 kb on - strand at 3743.852 kb on + strand at 3743.934 kb on - strand at 3743.937 kb on + strand at 3743.937 kb on + strand at 3744.013 kb on + strand at 3744.062 kb on - strand at 3744.075 kb on - strand, within ABZR88_RS15110 at 3744.185 kb on + strand, within ABZR88_RS15110 at 3744.185 kb on + strand, within ABZR88_RS15110
Per-strain Table
Position Strand Gene LocusTag Fraction alginate (C) remove 3,742,104 - ABZR88_RS15090 0.83 +0.1 3,742,146 - ABZR88_RS15090 0.88 -0.2 3,742,199 - +0.1 3,742,245 - -0.5 3,742,640 - ABZR88_RS15095 0.50 +0.4 3,742,710 + ABZR88_RS15095 0.62 -0.4 3,742,941 + -0.5 3,743,057 + +0.1 3,743,067 + +1.4 3,743,222 - ABZR88_RS15100 0.68 -0.4 3,743,227 - ABZR88_RS15100 0.71 -1.1 3,743,280 + -0.1 3,743,287 + -0.5 3,743,289 + -0.3 3,743,298 + -0.8 3,743,576 + ABZR88_RS15105 0.47 -0.1 3,743,758 - ABZR88_RS15105 0.88 +0.0 3,743,849 - -0.7 3,743,852 + +0.1 3,743,934 - +0.0 3,743,937 + -0.2 3,743,937 + +1.1 3,744,013 + +0.6 3,744,062 - -0.3 3,744,075 - ABZR88_RS15110 0.10 -0.2 3,744,185 + ABZR88_RS15110 0.20 +0.1 3,744,185 + ABZR88_RS15110 0.20 +0.1
Or see this region's nucleotide sequence