Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15100

Experiment: alginate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15090 and ABZR88_RS15095 are separated by 96 nucleotidesABZR88_RS15095 and ABZR88_RS15100 are separated by 145 nucleotidesABZR88_RS15100 and ABZR88_RS15105 are separated by 78 nucleotidesABZR88_RS15105 and ABZR88_RS15110 are separated by 139 nucleotides ABZR88_RS15090: ABZR88_RS15090 - hypothetical protein, at 3,741,482 to 3,742,234 _RS15090 ABZR88_RS15095: ABZR88_RS15095 - hypothetical protein, at 3,742,331 to 3,742,945 _RS15095 ABZR88_RS15100: ABZR88_RS15100 - cold-shock protein, at 3,743,091 to 3,743,282 _RS15100 ABZR88_RS15105: ABZR88_RS15105 - cold-shock protein, at 3,743,361 to 3,743,813 _RS15105 ABZR88_RS15110: ABZR88_RS15110 - CehA/McbA family metallohydrolase, at 3,743,953 to 3,745,137 _RS15110 Position (kb) 3743 3744Strain fitness (log2 ratio) -1 0 1at 3742.104 kb on - strand, within ABZR88_RS15090at 3742.146 kb on - strand, within ABZR88_RS15090at 3742.199 kb on - strandat 3742.245 kb on - strandat 3742.640 kb on - strand, within ABZR88_RS15095at 3742.710 kb on + strand, within ABZR88_RS15095at 3742.941 kb on + strandat 3743.057 kb on + strandat 3743.067 kb on + strandat 3743.222 kb on - strand, within ABZR88_RS15100at 3743.227 kb on - strand, within ABZR88_RS15100at 3743.280 kb on + strandat 3743.287 kb on + strandat 3743.289 kb on + strandat 3743.298 kb on + strandat 3743.576 kb on + strand, within ABZR88_RS15105at 3743.758 kb on - strand, within ABZR88_RS15105at 3743.849 kb on - strandat 3743.852 kb on + strandat 3743.934 kb on - strandat 3743.937 kb on + strandat 3743.937 kb on + strandat 3744.013 kb on + strandat 3744.062 kb on - strandat 3744.075 kb on - strand, within ABZR88_RS15110at 3744.185 kb on + strand, within ABZR88_RS15110at 3744.185 kb on + strand, within ABZR88_RS15110

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Per-strain Table

Position Strand Gene LocusTag Fraction alginate (C)
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3,742,104 - ABZR88_RS15090 0.83 +0.1
3,742,146 - ABZR88_RS15090 0.88 -0.2
3,742,199 - +0.1
3,742,245 - -0.5
3,742,640 - ABZR88_RS15095 0.50 +0.4
3,742,710 + ABZR88_RS15095 0.62 -0.4
3,742,941 + -0.5
3,743,057 + +0.1
3,743,067 + +1.4
3,743,222 - ABZR88_RS15100 0.68 -0.4
3,743,227 - ABZR88_RS15100 0.71 -1.1
3,743,280 + -0.1
3,743,287 + -0.5
3,743,289 + -0.3
3,743,298 + -0.8
3,743,576 + ABZR88_RS15105 0.47 -0.1
3,743,758 - ABZR88_RS15105 0.88 +0.0
3,743,849 - -0.7
3,743,852 + +0.1
3,743,934 - +0.0
3,743,937 + -0.2
3,743,937 + +1.1
3,744,013 + +0.6
3,744,062 - -0.3
3,744,075 - ABZR88_RS15110 0.10 -0.2
3,744,185 + ABZR88_RS15110 0.20 +0.1
3,744,185 + ABZR88_RS15110 0.20 +0.1

Or see this region's nucleotide sequence