Experiment: alginate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10155 and ABZR88_RS10160 are separated by 10 nucleotides ABZR88_RS10160 and ABZR88_RS10165 are separated by 222 nucleotides ABZR88_RS10165 and ABZR88_RS10170 are separated by 119 nucleotides
ABZR88_RS10155: ABZR88_RS10155 - S1C family serine protease, at 2,505,787 to 2,506,896
_RS10155
ABZR88_RS10160: ABZR88_RS10160 - RNA polymerase sigma factor, at 2,506,907 to 2,507,479
_RS10160
ABZR88_RS10165: ABZR88_RS10165 - hypothetical protein, at 2,507,702 to 2,507,986
_RS10165
ABZR88_RS10170: ABZR88_RS10170 - hypothetical protein, at 2,508,106 to 2,508,324
_RS10170
Position (kb)
2506
2507
2508 Strain fitness (log2 ratio)
-1
0
1 at 2506.678 kb on + strand, within ABZR88_RS10155 at 2506.787 kb on - strand at 2506.909 kb on - strand at 2506.909 kb on - strand at 2507.147 kb on + strand, within ABZR88_RS10160 at 2507.287 kb on + strand, within ABZR88_RS10160 at 2507.388 kb on + strand, within ABZR88_RS10160 at 2507.388 kb on + strand, within ABZR88_RS10160 at 2507.389 kb on - strand, within ABZR88_RS10160 at 2507.506 kb on - strand at 2507.512 kb on + strand at 2507.549 kb on - strand at 2507.688 kb on - strand at 2507.797 kb on + strand, within ABZR88_RS10165 at 2508.055 kb on + strand at 2508.078 kb on + strand at 2508.180 kb on + strand, within ABZR88_RS10170 at 2508.235 kb on - strand, within ABZR88_RS10170 at 2508.255 kb on + strand, within ABZR88_RS10170 at 2508.255 kb on + strand, within ABZR88_RS10170
Per-strain Table
Position Strand Gene LocusTag Fraction alginate (C) remove 2,506,678 + ABZR88_RS10155 0.80 +0.6 2,506,787 - -0.2 2,506,909 - +0.2 2,506,909 - -0.0 2,507,147 + ABZR88_RS10160 0.42 -0.3 2,507,287 + ABZR88_RS10160 0.66 -0.2 2,507,388 + ABZR88_RS10160 0.84 -1.0 2,507,388 + ABZR88_RS10160 0.84 -1.6 2,507,389 - ABZR88_RS10160 0.84 -1.5 2,507,506 - -0.1 2,507,512 + +0.2 2,507,549 - -0.1 2,507,688 - +0.8 2,507,797 + ABZR88_RS10165 0.33 -0.4 2,508,055 + -0.6 2,508,078 + -0.3 2,508,180 + ABZR88_RS10170 0.34 -0.1 2,508,235 - ABZR88_RS10170 0.59 -0.4 2,508,255 + ABZR88_RS10170 0.68 -1.2 2,508,255 + ABZR88_RS10170 0.68 +1.0
Or see this region's nucleotide sequence