Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS10160

Experiment: alginate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS10155 and ABZR88_RS10160 are separated by 10 nucleotidesABZR88_RS10160 and ABZR88_RS10165 are separated by 222 nucleotidesABZR88_RS10165 and ABZR88_RS10170 are separated by 119 nucleotides ABZR88_RS10155: ABZR88_RS10155 - S1C family serine protease, at 2,505,787 to 2,506,896 _RS10155 ABZR88_RS10160: ABZR88_RS10160 - RNA polymerase sigma factor, at 2,506,907 to 2,507,479 _RS10160 ABZR88_RS10165: ABZR88_RS10165 - hypothetical protein, at 2,507,702 to 2,507,986 _RS10165 ABZR88_RS10170: ABZR88_RS10170 - hypothetical protein, at 2,508,106 to 2,508,324 _RS10170 Position (kb) 2506 2507 2508Strain fitness (log2 ratio) -1 0 1at 2506.678 kb on + strand, within ABZR88_RS10155at 2506.787 kb on - strandat 2506.909 kb on - strandat 2506.909 kb on - strandat 2507.147 kb on + strand, within ABZR88_RS10160at 2507.287 kb on + strand, within ABZR88_RS10160at 2507.388 kb on + strand, within ABZR88_RS10160at 2507.388 kb on + strand, within ABZR88_RS10160at 2507.389 kb on - strand, within ABZR88_RS10160at 2507.506 kb on - strandat 2507.512 kb on + strandat 2507.549 kb on - strandat 2507.688 kb on - strandat 2507.797 kb on + strand, within ABZR88_RS10165at 2508.055 kb on + strandat 2508.078 kb on + strandat 2508.180 kb on + strand, within ABZR88_RS10170at 2508.235 kb on - strand, within ABZR88_RS10170at 2508.255 kb on + strand, within ABZR88_RS10170at 2508.255 kb on + strand, within ABZR88_RS10170

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Per-strain Table

Position Strand Gene LocusTag Fraction alginate (C)
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2,506,678 + ABZR88_RS10155 0.80 +0.6
2,506,787 - -0.2
2,506,909 - +0.2
2,506,909 - -0.0
2,507,147 + ABZR88_RS10160 0.42 -0.3
2,507,287 + ABZR88_RS10160 0.66 -0.2
2,507,388 + ABZR88_RS10160 0.84 -1.0
2,507,388 + ABZR88_RS10160 0.84 -1.6
2,507,389 - ABZR88_RS10160 0.84 -1.5
2,507,506 - -0.1
2,507,512 + +0.2
2,507,549 - -0.1
2,507,688 - +0.8
2,507,797 + ABZR88_RS10165 0.33 -0.4
2,508,055 + -0.6
2,508,078 + -0.3
2,508,180 + ABZR88_RS10170 0.34 -0.1
2,508,235 - ABZR88_RS10170 0.59 -0.4
2,508,255 + ABZR88_RS10170 0.68 -1.2
2,508,255 + ABZR88_RS10170 0.68 +1.0

Or see this region's nucleotide sequence