Experiment: alginate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02045 and ABZR88_RS02050 overlap by 4 nucleotides ABZR88_RS02050 and ABZR88_RS02055 are separated by 20 nucleotides ABZR88_RS02055 and ABZR88_RS02060 are separated by 345 nucleotides
ABZR88_RS02045: ABZR88_RS02045 - DUF5683 domain-containing protein, at 459,866 to 460,558
_RS02045
ABZR88_RS02050: ABZR88_RS02050 - 4-hydroxy-tetrahydrodipicolinate reductase, at 460,555 to 461,304
_RS02050
ABZR88_RS02055: ABZR88_RS02055 - signal peptidase I, at 461,325 to 462,776
_RS02055
ABZR88_RS02060: ABZR88_RS02060 - undecaprenyl-diphosphate phosphatase, at 463,122 to 463,928
_RS02060
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1 at 461.492 kb on + strand, within ABZR88_RS02055 at 461.535 kb on - strand, within ABZR88_RS02055 at 461.613 kb on - strand, within ABZR88_RS02055 at 461.738 kb on + strand, within ABZR88_RS02055 at 461.794 kb on - strand, within ABZR88_RS02055 at 461.798 kb on + strand, within ABZR88_RS02055 at 461.852 kb on - strand, within ABZR88_RS02055 at 461.860 kb on + strand, within ABZR88_RS02055 at 461.861 kb on - strand, within ABZR88_RS02055 at 462.011 kb on - strand, within ABZR88_RS02055 at 462.020 kb on + strand, within ABZR88_RS02055 at 462.021 kb on - strand, within ABZR88_RS02055 at 462.186 kb on + strand, within ABZR88_RS02055 at 462.191 kb on + strand, within ABZR88_RS02055 at 462.193 kb on + strand, within ABZR88_RS02055 at 462.372 kb on + strand, within ABZR88_RS02055 at 462.420 kb on - strand, within ABZR88_RS02055 at 462.424 kb on - strand, within ABZR88_RS02055 at 462.518 kb on + strand, within ABZR88_RS02055 at 462.526 kb on + strand, within ABZR88_RS02055 at 462.556 kb on + strand, within ABZR88_RS02055 at 462.580 kb on - strand, within ABZR88_RS02055 at 462.597 kb on + strand, within ABZR88_RS02055 at 462.601 kb on - strand, within ABZR88_RS02055 at 462.676 kb on + strand at 462.736 kb on + strand at 462.784 kb on + strand at 462.845 kb on + strand at 463.096 kb on - strand at 463.140 kb on + strand at 463.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction alginate (C) remove 461,492 + ABZR88_RS02055 0.12 +0.6 461,535 - ABZR88_RS02055 0.14 -0.7 461,613 - ABZR88_RS02055 0.20 -0.5 461,738 + ABZR88_RS02055 0.28 -0.6 461,794 - ABZR88_RS02055 0.32 -1.2 461,798 + ABZR88_RS02055 0.33 -1.5 461,852 - ABZR88_RS02055 0.36 +0.0 461,860 + ABZR88_RS02055 0.37 -0.7 461,861 - ABZR88_RS02055 0.37 -0.4 462,011 - ABZR88_RS02055 0.47 -0.0 462,020 + ABZR88_RS02055 0.48 -1.4 462,021 - ABZR88_RS02055 0.48 -0.7 462,186 + ABZR88_RS02055 0.59 -0.8 462,191 + ABZR88_RS02055 0.60 -0.1 462,193 + ABZR88_RS02055 0.60 -0.9 462,372 + ABZR88_RS02055 0.72 -1.6 462,420 - ABZR88_RS02055 0.75 -0.4 462,424 - ABZR88_RS02055 0.76 +1.2 462,518 + ABZR88_RS02055 0.82 -1.1 462,526 + ABZR88_RS02055 0.83 -0.8 462,556 + ABZR88_RS02055 0.85 -0.8 462,580 - ABZR88_RS02055 0.86 -1.1 462,597 + ABZR88_RS02055 0.88 -1.2 462,601 - ABZR88_RS02055 0.88 -1.1 462,676 + -1.5 462,736 + -1.0 462,784 + -0.2 462,845 + +0.8 463,096 - -1.8 463,140 + +0.1 463,140 + -0.1
Or see this region's nucleotide sequence