Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS00140

Experiment: alginate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS00130 and ABZR88_RS00135 are separated by 145 nucleotidesABZR88_RS00135 and ABZR88_RS00140 are separated by 271 nucleotidesABZR88_RS00140 and ABZR88_RS00145 are separated by 143 nucleotidesABZR88_RS00145 and ABZR88_RS00150 are separated by 12 nucleotidesABZR88_RS00150 and ABZR88_RS00155 are separated by 15 nucleotides ABZR88_RS00130: ABZR88_RS00130 - transcription elongation factor GreA, at 22,010 to 22,483 _RS00130 ABZR88_RS00135: ABZR88_RS00135 - HIT family protein, at 22,629 to 23,045 _RS00135 ABZR88_RS00140: ABZR88_RS00140 - AAA family ATPase, at 23,317 to 23,853 _RS00140 ABZR88_RS00145: ABZR88_RS00145 - DUF177 domain-containing protein, at 23,997 to 24,521 _RS00145 ABZR88_RS00150: ABZR88_RS00150 - 50S ribosomal protein L32, at 24,534 to 24,725 _RS00150 ABZR88_RS00155: ABZR88_RS00155 - phosphate acyltransferase PlsX, at 24,741 to 25,682 _RS00155 Position (kb) 23 24Strain fitness (log2 ratio) -1 0 1 2at 22.376 kb on - strand, within ABZR88_RS00130at 22.485 kb on - strandat 22.495 kb on + strandat 22.536 kb on + strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.651 kb on + strandat 22.666 kb on + strandat 22.770 kb on + strand, within ABZR88_RS00135at 22.770 kb on + strand, within ABZR88_RS00135at 22.798 kb on - strand, within ABZR88_RS00135at 22.880 kb on - strand, within ABZR88_RS00135at 22.922 kb on + strand, within ABZR88_RS00135at 22.922 kb on + strand, within ABZR88_RS00135at 23.269 kb on - strandat 23.296 kb on + strandat 23.465 kb on + strand, within ABZR88_RS00140at 23.466 kb on - strand, within ABZR88_RS00140at 23.560 kb on - strand, within ABZR88_RS00140at 23.647 kb on + strand, within ABZR88_RS00140at 23.769 kb on - strand, within ABZR88_RS00140at 23.774 kb on + strand, within ABZR88_RS00140at 24.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction alginate (C)
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22,376 - ABZR88_RS00130 0.77 -1.2
22,485 - -0.0
22,495 + +0.1
22,536 + +0.4
22,537 - +1.3
22,537 - +0.4
22,651 + +0.2
22,666 + +1.3
22,770 + ABZR88_RS00135 0.34 -0.1
22,770 + ABZR88_RS00135 0.34 +2.0
22,798 - ABZR88_RS00135 0.41 +0.9
22,880 - ABZR88_RS00135 0.60 +0.7
22,922 + ABZR88_RS00135 0.70 +1.5
22,922 + ABZR88_RS00135 0.70 +0.7
23,269 - +0.1
23,296 + -0.1
23,465 + ABZR88_RS00140 0.28 -0.2
23,466 - ABZR88_RS00140 0.28 +1.2
23,560 - ABZR88_RS00140 0.45 +0.0
23,647 + ABZR88_RS00140 0.61 +0.1
23,769 - ABZR88_RS00140 0.84 +0.3
23,774 + ABZR88_RS00140 0.85 +1.0
24,015 + +0.2

Or see this region's nucleotide sequence