Experiment: alginate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00025 and ABZR88_RS00030 are separated by 185 nucleotides ABZR88_RS00030 and ABZR88_RS00035 are separated by 68 nucleotides
ABZR88_RS00025: ABZR88_RS00025 - glycosyltransferase, at 3,914 to 5,143
_RS00025
ABZR88_RS00030: ABZR88_RS00030 - glycine C-acetyltransferase, at 5,329 to 6,519
_RS00030
ABZR88_RS00035: ABZR88_RS00035 - phenylalanine--tRNA ligase subunit alpha, at 6,588 to 7,625
_RS00035
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 4.419 kb on + strand, within ABZR88_RS00025 at 4.446 kb on - strand, within ABZR88_RS00025 at 4.532 kb on - strand, within ABZR88_RS00025 at 4.566 kb on + strand, within ABZR88_RS00025 at 4.776 kb on - strand, within ABZR88_RS00025 at 4.808 kb on + strand, within ABZR88_RS00025 at 4.900 kb on - strand, within ABZR88_RS00025 at 4.900 kb on - strand, within ABZR88_RS00025 at 4.901 kb on + strand, within ABZR88_RS00025 at 5.011 kb on + strand, within ABZR88_RS00025 at 5.054 kb on + strand at 5.204 kb on + strand at 5.225 kb on - strand at 5.288 kb on - strand at 5.572 kb on - strand, within ABZR88_RS00030 at 5.640 kb on + strand, within ABZR88_RS00030 at 5.716 kb on - strand, within ABZR88_RS00030 at 5.716 kb on - strand, within ABZR88_RS00030 at 5.904 kb on + strand, within ABZR88_RS00030 at 6.030 kb on + strand, within ABZR88_RS00030 at 6.034 kb on - strand, within ABZR88_RS00030 at 6.145 kb on - strand, within ABZR88_RS00030 at 6.320 kb on - strand, within ABZR88_RS00030 at 6.374 kb on - strand, within ABZR88_RS00030 at 6.429 kb on - strand at 6.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction alginate (C) remove 4,419 + ABZR88_RS00025 0.41 +0.1 4,446 - ABZR88_RS00025 0.43 +0.3 4,532 - ABZR88_RS00025 0.50 +0.1 4,566 + ABZR88_RS00025 0.53 +0.1 4,776 - ABZR88_RS00025 0.70 -0.3 4,808 + ABZR88_RS00025 0.73 -1.0 4,900 - ABZR88_RS00025 0.80 -0.0 4,900 - ABZR88_RS00025 0.80 -0.3 4,901 + ABZR88_RS00025 0.80 +0.3 5,011 + ABZR88_RS00025 0.89 -0.8 5,054 + -0.1 5,204 + -0.3 5,225 - -0.0 5,288 - +0.5 5,572 - ABZR88_RS00030 0.20 -2.5 5,640 + ABZR88_RS00030 0.26 -1.5 5,716 - ABZR88_RS00030 0.32 -0.2 5,716 - ABZR88_RS00030 0.32 -0.4 5,904 + ABZR88_RS00030 0.48 +0.9 6,030 + ABZR88_RS00030 0.59 -0.7 6,034 - ABZR88_RS00030 0.59 +0.5 6,145 - ABZR88_RS00030 0.69 -0.6 6,320 - ABZR88_RS00030 0.83 -0.3 6,374 - ABZR88_RS00030 0.88 -0.0 6,429 - +0.3 6,452 + -1.4
Or see this region's nucleotide sequence