Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20500 and ABZR88_RS20505 are separated by 222 nucleotides ABZR88_RS20505 and ABZR88_RS20510 are separated by 80 nucleotides ABZR88_RS20510 and ABZR88_RS20515 are separated by 284 nucleotides
ABZR88_RS20500: ABZR88_RS20500 - aspartate 1-decarboxylase, at 4,964,410 to 4,964,757
_RS20500
ABZR88_RS20505: ABZR88_RS20505 - hypothetical protein, at 4,964,980 to 4,965,231
_RS20505
ABZR88_RS20510: ABZR88_RS20510 - SDR family oxidoreductase, at 4,965,312 to 4,966,124
_RS20510
ABZR88_RS20515: ABZR88_RS20515 - alkaline phosphatase PafA, at 4,966,409 to 4,968,064
_RS20515
Position (kb) 4965
4966
4967 Strain fitness (log2 ratio) -2
-1
0
1 at 4964.333 kb on - strand at 4964.865 kb on + strand at 4964.913 kb on - strand at 4965.025 kb on + strand, within ABZR88_RS20505 at 4965.098 kb on + strand, within ABZR88_RS20505 at 4965.099 kb on - strand, within ABZR88_RS20505 at 4965.103 kb on - strand, within ABZR88_RS20505 at 4965.103 kb on - strand, within ABZR88_RS20505 at 4965.108 kb on + strand, within ABZR88_RS20505 at 4965.111 kb on + strand, within ABZR88_RS20505 at 4965.309 kb on - strand at 4965.351 kb on - strand at 4965.633 kb on - strand, within ABZR88_RS20510 at 4965.651 kb on - strand, within ABZR88_RS20510 at 4965.792 kb on + strand, within ABZR88_RS20510 at 4965.878 kb on - strand, within ABZR88_RS20510 at 4965.878 kb on - strand, within ABZR88_RS20510 at 4965.954 kb on - strand, within ABZR88_RS20510 at 4965.994 kb on - strand, within ABZR88_RS20510 at 4966.026 kb on - strand, within ABZR88_RS20510 at 4966.050 kb on + strand at 4966.176 kb on - strand at 4966.198 kb on + strand at 4966.417 kb on + strand at 4966.495 kb on + strand at 4966.571 kb on - strand at 4966.834 kb on + strand, within ABZR88_RS20515 at 4966.876 kb on + strand, within ABZR88_RS20515 at 4966.877 kb on - strand, within ABZR88_RS20515 at 4966.880 kb on + strand, within ABZR88_RS20515 at 4966.887 kb on + strand, within ABZR88_RS20515 at 4966.888 kb on - strand, within ABZR88_RS20515 at 4967.020 kb on - strand, within ABZR88_RS20515 at 4967.089 kb on - strand, within ABZR88_RS20515 at 4967.114 kb on - strand, within ABZR88_RS20515
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 4,964,333 - -0.1 4,964,865 + -0.0 4,964,913 - +0.0 4,965,025 + ABZR88_RS20505 0.18 -0.3 4,965,098 + ABZR88_RS20505 0.47 -0.1 4,965,099 - ABZR88_RS20505 0.47 +0.3 4,965,103 - ABZR88_RS20505 0.49 +0.6 4,965,103 - ABZR88_RS20505 0.49 -1.3 4,965,108 + ABZR88_RS20505 0.51 -0.2 4,965,111 + ABZR88_RS20505 0.52 -1.8 4,965,309 - -0.2 4,965,351 - +0.0 4,965,633 - ABZR88_RS20510 0.39 +0.4 4,965,651 - ABZR88_RS20510 0.42 +0.6 4,965,792 + ABZR88_RS20510 0.59 -0.1 4,965,878 - ABZR88_RS20510 0.70 +0.3 4,965,878 - ABZR88_RS20510 0.70 +0.1 4,965,954 - ABZR88_RS20510 0.79 +1.0 4,965,994 - ABZR88_RS20510 0.84 -1.0 4,966,026 - ABZR88_RS20510 0.88 +0.0 4,966,050 + -0.3 4,966,176 - -0.3 4,966,198 + -0.9 4,966,417 + +0.5 4,966,495 + -0.4 4,966,571 - +0.4 4,966,834 + ABZR88_RS20515 0.26 -0.4 4,966,876 + ABZR88_RS20515 0.28 +0.7 4,966,877 - ABZR88_RS20515 0.28 -0.1 4,966,880 + ABZR88_RS20515 0.28 -0.4 4,966,887 + ABZR88_RS20515 0.29 +1.0 4,966,888 - ABZR88_RS20515 0.29 -0.4 4,967,020 - ABZR88_RS20515 0.37 -0.0 4,967,089 - ABZR88_RS20515 0.41 +0.1 4,967,114 - ABZR88_RS20515 0.43 +1.0
Or see this region's nucleotide sequence