Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16845 and ABZR88_RS16850 are separated by 86 nucleotides ABZR88_RS16850 and ABZR88_RS16855 are separated by 115 nucleotides ABZR88_RS16855 and ABZR88_RS16860 are separated by 4 nucleotides ABZR88_RS16860 and ABZR88_RS16865 are separated by 3 nucleotides
ABZR88_RS16845: ABZR88_RS16845 - conjugal transfer protein MobC, at 4,132,593 to 4,134,575
_RS16845
ABZR88_RS16850: ABZR88_RS16850 - helix-turn-helix domain-containing protein, at 4,134,662 to 4,135,435
_RS16850
ABZR88_RS16855: ABZR88_RS16855 - class I SAM-dependent DNA methyltransferase, at 4,135,551 to 4,138,475
_RS16855
ABZR88_RS16860: ABZR88_RS16860 - hypothetical protein, at 4,138,480 to 4,139,112
_RS16860
ABZR88_RS16865: ABZR88_RS16865 - CHAT domain-containing protein, at 4,139,116 to 4,141,314
_RS16865
Position (kb) 4135
4136
4137
4138
4139 Strain fitness (log2 ratio) -1
0
1 at 4134.643 kb on - strand at 4134.680 kb on - strand at 4134.680 kb on - strand at 4134.787 kb on + strand, within ABZR88_RS16850 at 4134.839 kb on - strand, within ABZR88_RS16850 at 4135.110 kb on + strand, within ABZR88_RS16850 at 4135.186 kb on + strand, within ABZR88_RS16850 at 4135.186 kb on + strand, within ABZR88_RS16850 at 4135.385 kb on - strand at 4135.385 kb on - strand at 4135.477 kb on + strand at 4135.482 kb on - strand at 4135.515 kb on - strand at 4138.652 kb on - strand, within ABZR88_RS16860 at 4138.765 kb on - strand, within ABZR88_RS16860 at 4138.860 kb on - strand, within ABZR88_RS16860 at 4138.906 kb on - strand, within ABZR88_RS16860 at 4139.013 kb on + strand, within ABZR88_RS16860 at 4139.014 kb on - strand, within ABZR88_RS16860 at 4139.014 kb on - strand, within ABZR88_RS16860 at 4139.022 kb on + strand, within ABZR88_RS16860 at 4139.037 kb on + strand, within ABZR88_RS16860 at 4139.053 kb on - strand at 4139.251 kb on - strand at 4139.424 kb on + strand, within ABZR88_RS16865
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 4,134,643 - -0.3 4,134,680 - +0.1 4,134,680 - +0.9 4,134,787 + ABZR88_RS16850 0.16 -1.0 4,134,839 - ABZR88_RS16850 0.23 -0.4 4,135,110 + ABZR88_RS16850 0.58 -0.2 4,135,186 + ABZR88_RS16850 0.68 +0.3 4,135,186 + ABZR88_RS16850 0.68 -1.1 4,135,385 - +0.4 4,135,385 - +0.2 4,135,477 + -0.2 4,135,482 - +0.1 4,135,515 - +0.1 4,138,652 - ABZR88_RS16860 0.27 -0.4 4,138,765 - ABZR88_RS16860 0.45 -0.0 4,138,860 - ABZR88_RS16860 0.60 +0.0 4,138,906 - ABZR88_RS16860 0.67 -1.4 4,139,013 + ABZR88_RS16860 0.84 +0.5 4,139,014 - ABZR88_RS16860 0.84 -0.6 4,139,014 - ABZR88_RS16860 0.84 -0.0 4,139,022 + ABZR88_RS16860 0.86 -0.2 4,139,037 + ABZR88_RS16860 0.88 +0.1 4,139,053 - +0.0 4,139,251 - +0.6 4,139,424 + ABZR88_RS16865 0.14 +0.6
Or see this region's nucleotide sequence