Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16840

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16830 and ABZR88_RS16835 are separated by 192 nucleotidesABZR88_RS16835 and ABZR88_RS16840 are separated by 29 nucleotidesABZR88_RS16840 and ABZR88_RS16845 are separated by 171 nucleotides ABZR88_RS16830: ABZR88_RS16830 - toprim domain-containing protein, at 4,129,624 to 4,130,556 _RS16830 ABZR88_RS16835: ABZR88_RS16835 - plasmid mobilization relaxosome protein MobC, at 4,130,749 to 4,131,141 _RS16835 ABZR88_RS16840: ABZR88_RS16840 - relaxase/mobilization nuclease domain-containing protein, at 4,131,171 to 4,132,421 _RS16840 ABZR88_RS16845: ABZR88_RS16845 - conjugal transfer protein MobC, at 4,132,593 to 4,134,575 _RS16845 Position (kb) 4131 4132 4133Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4130.241 kb on + strand, within ABZR88_RS16830at 4130.373 kb on - strand, within ABZR88_RS16830at 4130.622 kb on + strandat 4130.703 kb on + strandat 4130.704 kb on - strandat 4131.330 kb on - strand, within ABZR88_RS16840at 4131.433 kb on + strand, within ABZR88_RS16840at 4131.433 kb on + strand, within ABZR88_RS16840at 4131.958 kb on + strand, within ABZR88_RS16840at 4132.089 kb on + strand, within ABZR88_RS16840at 4132.089 kb on + strand, within ABZR88_RS16840at 4132.090 kb on - strand, within ABZR88_RS16840at 4132.143 kb on + strand, within ABZR88_RS16840at 4132.181 kb on - strand, within ABZR88_RS16840at 4132.451 kb on - strandat 4132.482 kb on + strandat 4132.657 kb on + strandat 4132.742 kb on - strandat 4132.781 kb on + strandat 4132.886 kb on - strand, within ABZR88_RS16845at 4132.966 kb on - strand, within ABZR88_RS16845at 4132.967 kb on + strand, within ABZR88_RS16845at 4132.968 kb on - strand, within ABZR88_RS16845at 4132.973 kb on + strand, within ABZR88_RS16845at 4132.974 kb on - strand, within ABZR88_RS16845at 4133.136 kb on + strand, within ABZR88_RS16845at 4133.137 kb on - strand, within ABZR88_RS16845at 4133.237 kb on + strand, within ABZR88_RS16845at 4133.292 kb on + strand, within ABZR88_RS16845at 4133.358 kb on + strand, within ABZR88_RS16845

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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4,130,241 + ABZR88_RS16830 0.66 -1.2
4,130,373 - ABZR88_RS16830 0.80 +2.8
4,130,622 + -0.4
4,130,703 + +0.3
4,130,704 - +0.5
4,131,330 - ABZR88_RS16840 0.13 -2.4
4,131,433 + ABZR88_RS16840 0.21 -0.2
4,131,433 + ABZR88_RS16840 0.21 -0.1
4,131,958 + ABZR88_RS16840 0.63 -0.4
4,132,089 + ABZR88_RS16840 0.73 -0.2
4,132,089 + ABZR88_RS16840 0.73 -1.1
4,132,090 - ABZR88_RS16840 0.73 +0.0
4,132,143 + ABZR88_RS16840 0.78 -0.6
4,132,181 - ABZR88_RS16840 0.81 +0.2
4,132,451 - +0.4
4,132,482 + -1.1
4,132,657 + +0.4
4,132,742 - +1.1
4,132,781 + +1.2
4,132,886 - ABZR88_RS16845 0.15 +0.7
4,132,966 - ABZR88_RS16845 0.19 +0.1
4,132,967 + ABZR88_RS16845 0.19 +0.1
4,132,968 - ABZR88_RS16845 0.19 -0.1
4,132,973 + ABZR88_RS16845 0.19 -1.4
4,132,974 - ABZR88_RS16845 0.19 -0.1
4,133,136 + ABZR88_RS16845 0.27 +0.1
4,133,137 - ABZR88_RS16845 0.27 -0.0
4,133,237 + ABZR88_RS16845 0.32 +0.5
4,133,292 + ABZR88_RS16845 0.35 +3.2
4,133,358 + ABZR88_RS16845 0.39 +0.0

Or see this region's nucleotide sequence