Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08775

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08770 and ABZR88_RS08775 are separated by 502 nucleotidesABZR88_RS08775 and ABZR88_RS08780 are separated by 250 nucleotides ABZR88_RS08770: ABZR88_RS08770 - sialate O-acetylesterase, at 2,199,995 to 2,201,959 _RS08770 ABZR88_RS08775: ABZR88_RS08775 - glycosyl hydrolase 115 family protein, at 2,202,462 to 2,205,026 _RS08775 ABZR88_RS08780: ABZR88_RS08780 - hybrid sensor histidine kinase/response regulator transcription factor, at 2,205,277 to 2,209,422 _RS08780 Position (kb) 2202 2203 2204 2205 2206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2201.527 kb on + strand, within ABZR88_RS08770at 2201.545 kb on + strand, within ABZR88_RS08770at 2201.582 kb on - strand, within ABZR88_RS08770at 2201.634 kb on - strand, within ABZR88_RS08770at 2201.971 kb on + strandat 2201.981 kb on + strandat 2201.981 kb on + strandat 2202.184 kb on + strandat 2202.284 kb on + strandat 2202.284 kb on + strandat 2202.285 kb on - strandat 2202.287 kb on - strandat 2202.313 kb on + strandat 2202.328 kb on + strandat 2202.329 kb on - strandat 2202.832 kb on - strand, within ABZR88_RS08775at 2202.960 kb on + strand, within ABZR88_RS08775at 2202.960 kb on + strand, within ABZR88_RS08775at 2203.002 kb on + strand, within ABZR88_RS08775at 2203.062 kb on - strand, within ABZR88_RS08775at 2203.130 kb on - strand, within ABZR88_RS08775at 2203.132 kb on - strand, within ABZR88_RS08775at 2203.173 kb on + strand, within ABZR88_RS08775at 2203.174 kb on - strand, within ABZR88_RS08775at 2203.442 kb on + strand, within ABZR88_RS08775at 2203.513 kb on + strand, within ABZR88_RS08775at 2203.749 kb on - strand, within ABZR88_RS08775at 2203.758 kb on - strand, within ABZR88_RS08775at 2203.792 kb on - strand, within ABZR88_RS08775at 2203.829 kb on - strand, within ABZR88_RS08775at 2203.982 kb on - strand, within ABZR88_RS08775at 2204.029 kb on + strand, within ABZR88_RS08775at 2204.058 kb on + strand, within ABZR88_RS08775at 2204.059 kb on - strand, within ABZR88_RS08775at 2204.179 kb on + strand, within ABZR88_RS08775at 2204.206 kb on + strand, within ABZR88_RS08775at 2204.208 kb on + strand, within ABZR88_RS08775at 2204.323 kb on - strand, within ABZR88_RS08775at 2204.379 kb on - strand, within ABZR88_RS08775at 2204.379 kb on - strand, within ABZR88_RS08775at 2204.453 kb on - strand, within ABZR88_RS08775at 2204.610 kb on + strand, within ABZR88_RS08775at 2204.624 kb on - strand, within ABZR88_RS08775at 2204.740 kb on - strand, within ABZR88_RS08775at 2204.740 kb on - strand, within ABZR88_RS08775at 2204.740 kb on - strand, within ABZR88_RS08775at 2204.847 kb on - strandat 2204.978 kb on - strandat 2205.078 kb on + strandat 2205.109 kb on + strandat 2205.429 kb on + strandat 2205.525 kb on + strandat 2205.526 kb on - strandat 2205.584 kb on - strandat 2205.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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2,201,527 + ABZR88_RS08770 0.78 -0.5
2,201,545 + ABZR88_RS08770 0.79 +0.6
2,201,582 - ABZR88_RS08770 0.81 +0.1
2,201,634 - ABZR88_RS08770 0.83 +0.4
2,201,971 + +0.1
2,201,981 + -0.4
2,201,981 + +0.2
2,202,184 + -0.6
2,202,284 + +0.9
2,202,284 + -0.2
2,202,285 - -2.9
2,202,287 - -0.6
2,202,313 + -0.3
2,202,328 + +0.1
2,202,329 - -0.6
2,202,832 - ABZR88_RS08775 0.14 -0.1
2,202,960 + ABZR88_RS08775 0.19 -0.0
2,202,960 + ABZR88_RS08775 0.19 -0.5
2,203,002 + ABZR88_RS08775 0.21 +0.0
2,203,062 - ABZR88_RS08775 0.23 +0.1
2,203,130 - ABZR88_RS08775 0.26 -0.9
2,203,132 - ABZR88_RS08775 0.26 +0.2
2,203,173 + ABZR88_RS08775 0.28 +0.0
2,203,174 - ABZR88_RS08775 0.28 -0.5
2,203,442 + ABZR88_RS08775 0.38 +0.9
2,203,513 + ABZR88_RS08775 0.41 -2.3
2,203,749 - ABZR88_RS08775 0.50 -0.2
2,203,758 - ABZR88_RS08775 0.51 -0.4
2,203,792 - ABZR88_RS08775 0.52 +1.3
2,203,829 - ABZR88_RS08775 0.53 +0.1
2,203,982 - ABZR88_RS08775 0.59 +0.5
2,204,029 + ABZR88_RS08775 0.61 +1.9
2,204,058 + ABZR88_RS08775 0.62 +0.4
2,204,059 - ABZR88_RS08775 0.62 +0.5
2,204,179 + ABZR88_RS08775 0.67 -0.8
2,204,206 + ABZR88_RS08775 0.68 +0.2
2,204,208 + ABZR88_RS08775 0.68 +0.5
2,204,323 - ABZR88_RS08775 0.73 -0.2
2,204,379 - ABZR88_RS08775 0.75 -0.1
2,204,379 - ABZR88_RS08775 0.75 +0.0
2,204,453 - ABZR88_RS08775 0.78 -0.2
2,204,610 + ABZR88_RS08775 0.84 +0.1
2,204,624 - ABZR88_RS08775 0.84 -0.2
2,204,740 - ABZR88_RS08775 0.89 -0.3
2,204,740 - ABZR88_RS08775 0.89 -0.5
2,204,740 - ABZR88_RS08775 0.89 -0.7
2,204,847 - -0.3
2,204,978 - -0.0
2,205,078 + +0.5
2,205,109 + -0.5
2,205,429 + +0.1
2,205,525 + -0.5
2,205,526 - -0.2
2,205,584 - -0.0
2,205,584 - -0.3

Or see this region's nucleotide sequence