Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07205

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07200 and ABZR88_RS07205 are separated by 8 nucleotidesABZR88_RS07205 and ABZR88_RS07210 are separated by 24 nucleotides ABZR88_RS07200: ABZR88_RS07200 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 1,773,818 to 1,776,037 _RS07200 ABZR88_RS07205: ABZR88_RS07205 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 1,776,046 to 1,778,376 _RS07205 ABZR88_RS07210: ABZR88_RS07210 - alpha-galactosidase, at 1,778,401 to 1,780,563 _RS07210 Position (kb) 1776 1777 1778 1779Strain fitness (log2 ratio) -2 -1 0 1at 1775.191 kb on + strand, within ABZR88_RS07200at 1775.250 kb on + strand, within ABZR88_RS07200at 1775.253 kb on + strand, within ABZR88_RS07200at 1775.567 kb on + strand, within ABZR88_RS07200at 1775.594 kb on + strand, within ABZR88_RS07200at 1775.611 kb on + strand, within ABZR88_RS07200at 1775.629 kb on + strand, within ABZR88_RS07200at 1775.694 kb on - strand, within ABZR88_RS07200at 1775.696 kb on - strand, within ABZR88_RS07200at 1775.809 kb on + strand, within ABZR88_RS07200at 1775.810 kb on - strand, within ABZR88_RS07200at 1775.828 kb on - strandat 1775.898 kb on + strandat 1776.060 kb on + strandat 1776.060 kb on + strandat 1776.123 kb on + strandat 1776.123 kb on + strandat 1776.431 kb on - strand, within ABZR88_RS07205at 1776.441 kb on + strand, within ABZR88_RS07205at 1776.442 kb on - strand, within ABZR88_RS07205at 1776.508 kb on - strand, within ABZR88_RS07205at 1776.533 kb on - strand, within ABZR88_RS07205at 1776.555 kb on + strand, within ABZR88_RS07205at 1776.607 kb on + strand, within ABZR88_RS07205at 1776.781 kb on + strand, within ABZR88_RS07205at 1776.847 kb on + strand, within ABZR88_RS07205at 1776.847 kb on + strand, within ABZR88_RS07205at 1776.850 kb on - strand, within ABZR88_RS07205at 1777.030 kb on - strand, within ABZR88_RS07205at 1777.183 kb on + strand, within ABZR88_RS07205at 1777.269 kb on - strand, within ABZR88_RS07205at 1777.284 kb on - strand, within ABZR88_RS07205at 1777.401 kb on - strand, within ABZR88_RS07205at 1777.401 kb on - strand, within ABZR88_RS07205at 1777.469 kb on - strand, within ABZR88_RS07205at 1777.578 kb on + strand, within ABZR88_RS07205at 1777.579 kb on - strand, within ABZR88_RS07205at 1777.863 kb on + strand, within ABZR88_RS07205at 1777.964 kb on - strand, within ABZR88_RS07205at 1778.107 kb on + strand, within ABZR88_RS07205at 1778.107 kb on + strand, within ABZR88_RS07205at 1778.107 kb on + strand, within ABZR88_RS07205at 1778.145 kb on - strandat 1778.264 kb on - strandat 1778.272 kb on - strandat 1778.361 kb on + strandat 1778.417 kb on - strandat 1778.449 kb on - strandat 1778.513 kb on + strandat 1778.548 kb on + strandat 1778.549 kb on - strandat 1778.664 kb on + strand, within ABZR88_RS07210at 1778.665 kb on - strand, within ABZR88_RS07210at 1778.767 kb on + strand, within ABZR88_RS07210at 1778.838 kb on - strand, within ABZR88_RS07210at 1778.967 kb on + strand, within ABZR88_RS07210at 1779.025 kb on + strand, within ABZR88_RS07210at 1779.245 kb on - strand, within ABZR88_RS07210at 1779.269 kb on + strand, within ABZR88_RS07210at 1779.269 kb on + strand, within ABZR88_RS07210at 1779.270 kb on - strand, within ABZR88_RS07210at 1779.302 kb on - strand, within ABZR88_RS07210at 1779.346 kb on - strand, within ABZR88_RS07210at 1779.358 kb on - strand, within ABZR88_RS07210at 1779.367 kb on - strand, within ABZR88_RS07210

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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1,775,191 + ABZR88_RS07200 0.62 +0.5
1,775,250 + ABZR88_RS07200 0.65 -0.2
1,775,253 + ABZR88_RS07200 0.65 -0.1
1,775,567 + ABZR88_RS07200 0.79 -0.4
1,775,594 + ABZR88_RS07200 0.80 -2.1
1,775,611 + ABZR88_RS07200 0.81 +0.4
1,775,629 + ABZR88_RS07200 0.82 -0.4
1,775,694 - ABZR88_RS07200 0.85 -0.3
1,775,696 - ABZR88_RS07200 0.85 -0.0
1,775,809 + ABZR88_RS07200 0.90 +0.0
1,775,810 - ABZR88_RS07200 0.90 +0.0
1,775,828 - -0.4
1,775,898 + +0.2
1,776,060 + +0.5
1,776,060 + -0.3
1,776,123 + +0.1
1,776,123 + +0.1
1,776,431 - ABZR88_RS07205 0.17 -0.3
1,776,441 + ABZR88_RS07205 0.17 -0.2
1,776,442 - ABZR88_RS07205 0.17 -0.2
1,776,508 - ABZR88_RS07205 0.20 -0.9
1,776,533 - ABZR88_RS07205 0.21 -0.7
1,776,555 + ABZR88_RS07205 0.22 -0.2
1,776,607 + ABZR88_RS07205 0.24 -0.2
1,776,781 + ABZR88_RS07205 0.32 -0.1
1,776,847 + ABZR88_RS07205 0.34 -0.0
1,776,847 + ABZR88_RS07205 0.34 +0.4
1,776,850 - ABZR88_RS07205 0.34 +1.2
1,777,030 - ABZR88_RS07205 0.42 -0.2
1,777,183 + ABZR88_RS07205 0.49 -0.1
1,777,269 - ABZR88_RS07205 0.52 +0.1
1,777,284 - ABZR88_RS07205 0.53 +0.0
1,777,401 - ABZR88_RS07205 0.58 +0.5
1,777,401 - ABZR88_RS07205 0.58 +0.0
1,777,469 - ABZR88_RS07205 0.61 +0.1
1,777,578 + ABZR88_RS07205 0.66 +0.8
1,777,579 - ABZR88_RS07205 0.66 -0.1
1,777,863 + ABZR88_RS07205 0.78 +0.4
1,777,964 - ABZR88_RS07205 0.82 +0.3
1,778,107 + ABZR88_RS07205 0.88 -0.2
1,778,107 + ABZR88_RS07205 0.88 -0.5
1,778,107 + ABZR88_RS07205 0.88 +0.1
1,778,145 - -0.3
1,778,264 - +0.1
1,778,272 - +1.2
1,778,361 + +0.2
1,778,417 - -0.8
1,778,449 - +0.1
1,778,513 + +0.9
1,778,548 + -1.1
1,778,549 - +0.2
1,778,664 + ABZR88_RS07210 0.12 +1.1
1,778,665 - ABZR88_RS07210 0.12 +1.1
1,778,767 + ABZR88_RS07210 0.17 -0.0
1,778,838 - ABZR88_RS07210 0.20 -0.8
1,778,967 + ABZR88_RS07210 0.26 -0.6
1,779,025 + ABZR88_RS07210 0.29 -2.2
1,779,245 - ABZR88_RS07210 0.39 +0.3
1,779,269 + ABZR88_RS07210 0.40 -0.7
1,779,269 + ABZR88_RS07210 0.40 -1.2
1,779,270 - ABZR88_RS07210 0.40 -0.1
1,779,302 - ABZR88_RS07210 0.42 +0.6
1,779,346 - ABZR88_RS07210 0.44 +0.1
1,779,358 - ABZR88_RS07210 0.44 -0.4
1,779,367 - ABZR88_RS07210 0.45 +0.1

Or see this region's nucleotide sequence