Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07200 and ABZR88_RS07205 are separated by 8 nucleotides ABZR88_RS07205 and ABZR88_RS07210 are separated by 24 nucleotides
ABZR88_RS07200: ABZR88_RS07200 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 1,773,818 to 1,776,037
_RS07200
ABZR88_RS07205: ABZR88_RS07205 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 1,776,046 to 1,778,376
_RS07205
ABZR88_RS07210: ABZR88_RS07210 - alpha-galactosidase, at 1,778,401 to 1,780,563
_RS07210
Position (kb)
1776
1777
1778
1779 Strain fitness (log2 ratio)
-2
-1
0
1 at 1775.191 kb on + strand, within ABZR88_RS07200 at 1775.250 kb on + strand, within ABZR88_RS07200 at 1775.253 kb on + strand, within ABZR88_RS07200 at 1775.567 kb on + strand, within ABZR88_RS07200 at 1775.594 kb on + strand, within ABZR88_RS07200 at 1775.611 kb on + strand, within ABZR88_RS07200 at 1775.629 kb on + strand, within ABZR88_RS07200 at 1775.694 kb on - strand, within ABZR88_RS07200 at 1775.696 kb on - strand, within ABZR88_RS07200 at 1775.809 kb on + strand, within ABZR88_RS07200 at 1775.810 kb on - strand, within ABZR88_RS07200 at 1775.828 kb on - strand at 1775.898 kb on + strand at 1776.060 kb on + strand at 1776.060 kb on + strand at 1776.123 kb on + strand at 1776.123 kb on + strand at 1776.431 kb on - strand, within ABZR88_RS07205 at 1776.441 kb on + strand, within ABZR88_RS07205 at 1776.442 kb on - strand, within ABZR88_RS07205 at 1776.508 kb on - strand, within ABZR88_RS07205 at 1776.533 kb on - strand, within ABZR88_RS07205 at 1776.555 kb on + strand, within ABZR88_RS07205 at 1776.607 kb on + strand, within ABZR88_RS07205 at 1776.781 kb on + strand, within ABZR88_RS07205 at 1776.847 kb on + strand, within ABZR88_RS07205 at 1776.847 kb on + strand, within ABZR88_RS07205 at 1776.850 kb on - strand, within ABZR88_RS07205 at 1777.030 kb on - strand, within ABZR88_RS07205 at 1777.183 kb on + strand, within ABZR88_RS07205 at 1777.269 kb on - strand, within ABZR88_RS07205 at 1777.284 kb on - strand, within ABZR88_RS07205 at 1777.401 kb on - strand, within ABZR88_RS07205 at 1777.401 kb on - strand, within ABZR88_RS07205 at 1777.469 kb on - strand, within ABZR88_RS07205 at 1777.578 kb on + strand, within ABZR88_RS07205 at 1777.579 kb on - strand, within ABZR88_RS07205 at 1777.863 kb on + strand, within ABZR88_RS07205 at 1777.964 kb on - strand, within ABZR88_RS07205 at 1778.107 kb on + strand, within ABZR88_RS07205 at 1778.107 kb on + strand, within ABZR88_RS07205 at 1778.107 kb on + strand, within ABZR88_RS07205 at 1778.145 kb on - strand at 1778.264 kb on - strand at 1778.272 kb on - strand at 1778.361 kb on + strand at 1778.417 kb on - strand at 1778.449 kb on - strand at 1778.513 kb on + strand at 1778.548 kb on + strand at 1778.549 kb on - strand at 1778.664 kb on + strand, within ABZR88_RS07210 at 1778.665 kb on - strand, within ABZR88_RS07210 at 1778.767 kb on + strand, within ABZR88_RS07210 at 1778.838 kb on - strand, within ABZR88_RS07210 at 1778.967 kb on + strand, within ABZR88_RS07210 at 1779.025 kb on + strand, within ABZR88_RS07210 at 1779.245 kb on - strand, within ABZR88_RS07210 at 1779.269 kb on + strand, within ABZR88_RS07210 at 1779.269 kb on + strand, within ABZR88_RS07210 at 1779.270 kb on - strand, within ABZR88_RS07210 at 1779.302 kb on - strand, within ABZR88_RS07210 at 1779.346 kb on - strand, within ABZR88_RS07210 at 1779.358 kb on - strand, within ABZR88_RS07210 at 1779.367 kb on - strand, within ABZR88_RS07210
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 1,775,191 + ABZR88_RS07200 0.62 +0.5 1,775,250 + ABZR88_RS07200 0.65 -0.2 1,775,253 + ABZR88_RS07200 0.65 -0.1 1,775,567 + ABZR88_RS07200 0.79 -0.4 1,775,594 + ABZR88_RS07200 0.80 -2.1 1,775,611 + ABZR88_RS07200 0.81 +0.4 1,775,629 + ABZR88_RS07200 0.82 -0.4 1,775,694 - ABZR88_RS07200 0.85 -0.3 1,775,696 - ABZR88_RS07200 0.85 -0.0 1,775,809 + ABZR88_RS07200 0.90 +0.0 1,775,810 - ABZR88_RS07200 0.90 +0.0 1,775,828 - -0.4 1,775,898 + +0.2 1,776,060 + +0.5 1,776,060 + -0.3 1,776,123 + +0.1 1,776,123 + +0.1 1,776,431 - ABZR88_RS07205 0.17 -0.3 1,776,441 + ABZR88_RS07205 0.17 -0.2 1,776,442 - ABZR88_RS07205 0.17 -0.2 1,776,508 - ABZR88_RS07205 0.20 -0.9 1,776,533 - ABZR88_RS07205 0.21 -0.7 1,776,555 + ABZR88_RS07205 0.22 -0.2 1,776,607 + ABZR88_RS07205 0.24 -0.2 1,776,781 + ABZR88_RS07205 0.32 -0.1 1,776,847 + ABZR88_RS07205 0.34 -0.0 1,776,847 + ABZR88_RS07205 0.34 +0.4 1,776,850 - ABZR88_RS07205 0.34 +1.2 1,777,030 - ABZR88_RS07205 0.42 -0.2 1,777,183 + ABZR88_RS07205 0.49 -0.1 1,777,269 - ABZR88_RS07205 0.52 +0.1 1,777,284 - ABZR88_RS07205 0.53 +0.0 1,777,401 - ABZR88_RS07205 0.58 +0.5 1,777,401 - ABZR88_RS07205 0.58 +0.0 1,777,469 - ABZR88_RS07205 0.61 +0.1 1,777,578 + ABZR88_RS07205 0.66 +0.8 1,777,579 - ABZR88_RS07205 0.66 -0.1 1,777,863 + ABZR88_RS07205 0.78 +0.4 1,777,964 - ABZR88_RS07205 0.82 +0.3 1,778,107 + ABZR88_RS07205 0.88 -0.2 1,778,107 + ABZR88_RS07205 0.88 -0.5 1,778,107 + ABZR88_RS07205 0.88 +0.1 1,778,145 - -0.3 1,778,264 - +0.1 1,778,272 - +1.2 1,778,361 + +0.2 1,778,417 - -0.8 1,778,449 - +0.1 1,778,513 + +0.9 1,778,548 + -1.1 1,778,549 - +0.2 1,778,664 + ABZR88_RS07210 0.12 +1.1 1,778,665 - ABZR88_RS07210 0.12 +1.1 1,778,767 + ABZR88_RS07210 0.17 -0.0 1,778,838 - ABZR88_RS07210 0.20 -0.8 1,778,967 + ABZR88_RS07210 0.26 -0.6 1,779,025 + ABZR88_RS07210 0.29 -2.2 1,779,245 - ABZR88_RS07210 0.39 +0.3 1,779,269 + ABZR88_RS07210 0.40 -0.7 1,779,269 + ABZR88_RS07210 0.40 -1.2 1,779,270 - ABZR88_RS07210 0.40 -0.1 1,779,302 - ABZR88_RS07210 0.42 +0.6 1,779,346 - ABZR88_RS07210 0.44 +0.1 1,779,358 - ABZR88_RS07210 0.44 -0.4 1,779,367 - ABZR88_RS07210 0.45 +0.1
Or see this region's nucleotide sequence