Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21695 and ABZR88_RS21700 are separated by 380 nucleotides ABZR88_RS21700 and ABZR88_RS21705 are separated by 462 nucleotides ABZR88_RS21705 and ABZR88_RS21710 are separated by 68 nucleotides
ABZR88_RS21695: ABZR88_RS21695 - Tex family protein, at 5,208,826 to 5,211,117
_RS21695
ABZR88_RS21700: ABZR88_RS21700 - Lrp/AsnC ligand binding domain-containing protein, at 5,211,498 to 5,211,974
_RS21700
ABZR88_RS21705: ABZR88_RS21705 - response regulator, at 5,212,437 to 5,212,817
_RS21705
ABZR88_RS21710: ABZR88_RS21710 - DUF983 domain-containing protein, at 5,212,886 to 5,213,317
_RS21710
Position (kb) 5211
5212 Strain fitness (log2 ratio) -2
-1
0
1 at 5210.523 kb on + strand, within ABZR88_RS21695 at 5210.635 kb on - strand, within ABZR88_RS21695 at 5211.269 kb on - strand at 5211.394 kb on - strand at 5211.452 kb on - strand at 5211.650 kb on + strand, within ABZR88_RS21700 at 5211.694 kb on - strand, within ABZR88_RS21700 at 5211.714 kb on - strand, within ABZR88_RS21700 at 5211.715 kb on + strand, within ABZR88_RS21700 at 5211.756 kb on - strand, within ABZR88_RS21700 at 5212.254 kb on - strand at 5212.378 kb on + strand at 5212.378 kb on + strand at 5212.434 kb on + strand at 5212.673 kb on + strand, within ABZR88_RS21705 at 5212.711 kb on + strand, within ABZR88_RS21705 at 5212.764 kb on + strand, within ABZR88_RS21705 at 5212.824 kb on - strand at 5212.844 kb on - strand at 5212.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 5,210,523 + ABZR88_RS21695 0.74 -0.4 5,210,635 - ABZR88_RS21695 0.79 +0.4 5,211,269 - +0.2 5,211,394 - -0.8 5,211,452 - +0.4 5,211,650 + ABZR88_RS21700 0.32 -0.8 5,211,694 - ABZR88_RS21700 0.41 +1.7 5,211,714 - ABZR88_RS21700 0.45 -1.2 5,211,715 + ABZR88_RS21700 0.45 -1.9 5,211,756 - ABZR88_RS21700 0.54 -1.2 5,212,254 - +0.1 5,212,378 + -0.0 5,212,378 + +0.3 5,212,434 + -1.5 5,212,673 + ABZR88_RS21705 0.62 +0.2 5,212,711 + ABZR88_RS21705 0.72 +0.4 5,212,764 + ABZR88_RS21705 0.86 +0.5 5,212,824 - +0.3 5,212,844 - -1.2 5,212,850 + -0.2
Or see this region's nucleotide sequence