Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20925 and ABZR88_RS20930 are separated by 490 nucleotides ABZR88_RS20930 and ABZR88_RS20935 are separated by 196 nucleotides
ABZR88_RS20925: ABZR88_RS20925 - thiamine-phosphate kinase, at 5,059,077 to 5,060,120
_RS20925
ABZR88_RS20930: ABZR88_RS20930 - methionine synthase, at 5,060,611 to 5,064,300
_RS20930
ABZR88_RS20935: ABZR88_RS20935 - methylenetetrahydrofolate reductase [NAD(P)H], at 5,064,497 to 5,065,456
_RS20935
Position (kb)
5060
5061
5062
5063
5064
5065 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5060.119 kb on - strand at 5060.213 kb on + strand at 5060.324 kb on + strand at 5060.345 kb on + strand at 5060.377 kb on - strand at 5060.478 kb on - strand at 5060.478 kb on - strand at 5060.752 kb on - strand at 5060.796 kb on - strand at 5060.799 kb on + strand at 5060.799 kb on + strand at 5061.191 kb on - strand, within ABZR88_RS20930 at 5061.399 kb on + strand, within ABZR88_RS20930 at 5061.464 kb on - strand, within ABZR88_RS20930 at 5062.127 kb on - strand, within ABZR88_RS20930 at 5062.131 kb on + strand, within ABZR88_RS20930 at 5062.134 kb on - strand, within ABZR88_RS20930 at 5062.326 kb on + strand, within ABZR88_RS20930 at 5062.758 kb on - strand, within ABZR88_RS20930 at 5062.916 kb on + strand, within ABZR88_RS20930 at 5062.965 kb on - strand, within ABZR88_RS20930 at 5063.956 kb on + strand at 5064.135 kb on + strand at 5064.136 kb on - strand at 5064.295 kb on + strand at 5064.296 kb on - strand at 5064.456 kb on - strand at 5064.457 kb on + strand at 5064.590 kb on - strand at 5064.663 kb on - strand, within ABZR88_RS20935 at 5064.728 kb on - strand, within ABZR88_RS20935 at 5064.759 kb on - strand, within ABZR88_RS20935 at 5065.003 kb on + strand, within ABZR88_RS20935 at 5065.003 kb on + strand, within ABZR88_RS20935
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 5,060,119 - -0.2 5,060,213 + -0.0 5,060,324 + -2.0 5,060,345 + -1.5 5,060,377 - -0.5 5,060,478 - +0.9 5,060,478 - -1.2 5,060,752 - +2.0 5,060,796 - -0.7 5,060,799 + -1.2 5,060,799 + -1.2 5,061,191 - ABZR88_RS20930 0.16 +0.9 5,061,399 + ABZR88_RS20930 0.21 -0.5 5,061,464 - ABZR88_RS20930 0.23 -1.5 5,062,127 - ABZR88_RS20930 0.41 -1.0 5,062,131 + ABZR88_RS20930 0.41 -0.9 5,062,134 - ABZR88_RS20930 0.41 -0.9 5,062,326 + ABZR88_RS20930 0.46 +0.1 5,062,758 - ABZR88_RS20930 0.58 -0.2 5,062,916 + ABZR88_RS20930 0.62 -1.7 5,062,965 - ABZR88_RS20930 0.64 +0.2 5,063,956 + -1.8 5,064,135 + +0.5 5,064,136 - -0.6 5,064,295 + -1.5 5,064,296 - -0.6 5,064,456 - +0.6 5,064,457 + +0.1 5,064,590 - +0.0 5,064,663 - ABZR88_RS20935 0.17 +0.8 5,064,728 - ABZR88_RS20935 0.24 +0.5 5,064,759 - ABZR88_RS20935 0.27 +0.6 5,065,003 + ABZR88_RS20935 0.53 +0.6 5,065,003 + ABZR88_RS20935 0.53 +0.6
Or see this region's nucleotide sequence