Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17680 and ABZR88_RS17685 overlap by 4 nucleotides ABZR88_RS17685 and ABZR88_RS17690 are separated by 46 nucleotides ABZR88_RS17690 and ABZR88_RS17695 are separated by 18 nucleotides
ABZR88_RS17680: ABZR88_RS17680 - glycosyl transferase, at 4,322,549 to 4,323,547
_RS17680
ABZR88_RS17685: ABZR88_RS17685 - acyltransferase, at 4,323,544 to 4,324,125
_RS17685
ABZR88_RS17690: ABZR88_RS17690 - glycosyltransferase family A protein, at 4,324,172 to 4,325,194
_RS17690
ABZR88_RS17695: ABZR88_RS17695 - polysaccharide ABC transporter ATP-binding protein, at 4,325,213 to 4,326,535
_RS17695
Position (kb)
4324
4325
4326 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4323.194 kb on + strand, within ABZR88_RS17680 at 4323.308 kb on - strand, within ABZR88_RS17680 at 4323.508 kb on - strand at 4323.512 kb on - strand at 4323.512 kb on - strand at 4323.521 kb on + strand at 4323.526 kb on + strand at 4323.771 kb on + strand, within ABZR88_RS17685 at 4323.846 kb on + strand, within ABZR88_RS17685 at 4323.854 kb on - strand, within ABZR88_RS17685 at 4323.924 kb on - strand, within ABZR88_RS17685 at 4323.928 kb on - strand, within ABZR88_RS17685 at 4323.963 kb on + strand, within ABZR88_RS17685 at 4323.986 kb on + strand, within ABZR88_RS17685 at 4324.027 kb on - strand, within ABZR88_RS17685 at 4324.261 kb on - strand at 4324.268 kb on - strand at 4324.281 kb on + strand, within ABZR88_RS17690 at 4324.349 kb on + strand, within ABZR88_RS17690 at 4324.349 kb on + strand, within ABZR88_RS17690 at 4324.350 kb on - strand, within ABZR88_RS17690 at 4324.382 kb on - strand, within ABZR88_RS17690 at 4324.561 kb on + strand, within ABZR88_RS17690 at 4324.574 kb on - strand, within ABZR88_RS17690 at 4324.599 kb on + strand, within ABZR88_RS17690 at 4324.600 kb on - strand, within ABZR88_RS17690 at 4324.688 kb on - strand, within ABZR88_RS17690 at 4324.688 kb on - strand, within ABZR88_RS17690 at 4324.760 kb on + strand, within ABZR88_RS17690 at 4324.782 kb on - strand, within ABZR88_RS17690 at 4324.821 kb on + strand, within ABZR88_RS17690 at 4324.866 kb on + strand, within ABZR88_RS17690 at 4324.867 kb on - strand, within ABZR88_RS17690 at 4324.960 kb on + strand, within ABZR88_RS17690 at 4324.990 kb on + strand, within ABZR88_RS17690 at 4324.993 kb on - strand, within ABZR88_RS17690 at 4325.027 kb on + strand, within ABZR88_RS17690 at 4325.223 kb on - strand at 4325.289 kb on + strand at 4325.504 kb on - strand, within ABZR88_RS17695 at 4325.523 kb on - strand, within ABZR88_RS17695 at 4325.552 kb on + strand, within ABZR88_RS17695 at 4325.638 kb on + strand, within ABZR88_RS17695 at 4325.713 kb on + strand, within ABZR88_RS17695 at 4325.714 kb on - strand, within ABZR88_RS17695 at 4325.758 kb on - strand, within ABZR88_RS17695 at 4325.758 kb on - strand, within ABZR88_RS17695 at 4325.780 kb on - strand, within ABZR88_RS17695 at 4325.790 kb on - strand, within ABZR88_RS17695 at 4325.824 kb on + strand, within ABZR88_RS17695 at 4325.855 kb on - strand, within ABZR88_RS17695 at 4326.015 kb on + strand, within ABZR88_RS17695 at 4326.015 kb on + strand, within ABZR88_RS17695 at 4326.047 kb on - strand, within ABZR88_RS17695 at 4326.144 kb on - strand, within ABZR88_RS17695 at 4326.145 kb on + strand, within ABZR88_RS17695 at 4326.145 kb on + strand, within ABZR88_RS17695 at 4326.146 kb on - strand, within ABZR88_RS17695 at 4326.181 kb on + strand, within ABZR88_RS17695
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 4,323,194 + ABZR88_RS17680 0.65 -2.2 4,323,308 - ABZR88_RS17680 0.76 -3.3 4,323,508 - -1.0 4,323,512 - -1.5 4,323,512 - -0.1 4,323,521 + -2.8 4,323,526 + -2.8 4,323,771 + ABZR88_RS17685 0.39 +0.0 4,323,846 + ABZR88_RS17685 0.52 +1.1 4,323,854 - ABZR88_RS17685 0.53 -0.7 4,323,924 - ABZR88_RS17685 0.65 +2.1 4,323,928 - ABZR88_RS17685 0.66 -0.0 4,323,963 + ABZR88_RS17685 0.72 +0.5 4,323,986 + ABZR88_RS17685 0.76 -0.1 4,324,027 - ABZR88_RS17685 0.83 -1.9 4,324,261 - -1.2 4,324,268 - -2.4 4,324,281 + ABZR88_RS17690 0.11 -1.5 4,324,349 + ABZR88_RS17690 0.17 -3.7 4,324,349 + ABZR88_RS17690 0.17 -1.6 4,324,350 - ABZR88_RS17690 0.17 -1.6 4,324,382 - ABZR88_RS17690 0.21 -2.4 4,324,561 + ABZR88_RS17690 0.38 -1.4 4,324,574 - ABZR88_RS17690 0.39 -1.4 4,324,599 + ABZR88_RS17690 0.42 -3.2 4,324,600 - ABZR88_RS17690 0.42 -1.9 4,324,688 - ABZR88_RS17690 0.50 -2.5 4,324,688 - ABZR88_RS17690 0.50 -2.3 4,324,760 + ABZR88_RS17690 0.57 +0.1 4,324,782 - ABZR88_RS17690 0.60 -1.0 4,324,821 + ABZR88_RS17690 0.63 -2.0 4,324,866 + ABZR88_RS17690 0.68 -1.2 4,324,867 - ABZR88_RS17690 0.68 -2.1 4,324,960 + ABZR88_RS17690 0.77 -3.1 4,324,990 + ABZR88_RS17690 0.80 -1.4 4,324,993 - ABZR88_RS17690 0.80 -2.5 4,325,027 + ABZR88_RS17690 0.84 -0.7 4,325,223 - +0.1 4,325,289 + -1.9 4,325,504 - ABZR88_RS17695 0.22 -1.4 4,325,523 - ABZR88_RS17695 0.23 -2.8 4,325,552 + ABZR88_RS17695 0.26 +1.1 4,325,638 + ABZR88_RS17695 0.32 -3.0 4,325,713 + ABZR88_RS17695 0.38 +0.1 4,325,714 - ABZR88_RS17695 0.38 -2.3 4,325,758 - ABZR88_RS17695 0.41 -4.1 4,325,758 - ABZR88_RS17695 0.41 -2.5 4,325,780 - ABZR88_RS17695 0.43 -2.1 4,325,790 - ABZR88_RS17695 0.44 -0.7 4,325,824 + ABZR88_RS17695 0.46 -1.9 4,325,855 - ABZR88_RS17695 0.49 -0.2 4,326,015 + ABZR88_RS17695 0.61 -1.7 4,326,015 + ABZR88_RS17695 0.61 -3.0 4,326,047 - ABZR88_RS17695 0.63 -1.7 4,326,144 - ABZR88_RS17695 0.70 +0.1 4,326,145 + ABZR88_RS17695 0.70 -2.2 4,326,145 + ABZR88_RS17695 0.70 -2.6 4,326,146 - ABZR88_RS17695 0.71 -0.2 4,326,181 + ABZR88_RS17695 0.73 -2.0
Or see this region's nucleotide sequence