Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17045

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17040 and ABZR88_RS17045 are separated by 326 nucleotidesABZR88_RS17045 and ABZR88_RS17050 are separated by 313 nucleotides ABZR88_RS17040: ABZR88_RS17040 - leucine--tRNA ligase, at 4,177,098 to 4,179,899 _RS17040 ABZR88_RS17045: ABZR88_RS17045 - TonB-dependent receptor, at 4,180,226 to 4,182,745 _RS17045 ABZR88_RS17050: ABZR88_RS17050 - DNA mismatch repair protein MutS, at 4,183,059 to 4,184,864 _RS17050 Position (kb) 4180 4181 4182 4183Strain fitness (log2 ratio) -2 -1 0 1 2at 4179.958 kb on + strandat 4180.004 kb on + strandat 4180.217 kb on + strandat 4180.254 kb on + strandat 4180.254 kb on + strandat 4180.255 kb on - strandat 4180.523 kb on - strand, within ABZR88_RS17045at 4180.535 kb on - strand, within ABZR88_RS17045at 4180.730 kb on - strand, within ABZR88_RS17045at 4180.750 kb on - strand, within ABZR88_RS17045at 4180.824 kb on + strand, within ABZR88_RS17045at 4180.889 kb on + strand, within ABZR88_RS17045at 4180.981 kb on + strand, within ABZR88_RS17045at 4180.994 kb on - strand, within ABZR88_RS17045at 4181.454 kb on - strand, within ABZR88_RS17045at 4181.518 kb on + strand, within ABZR88_RS17045at 4181.606 kb on - strand, within ABZR88_RS17045at 4181.615 kb on - strand, within ABZR88_RS17045at 4181.661 kb on - strand, within ABZR88_RS17045at 4181.794 kb on + strand, within ABZR88_RS17045at 4182.053 kb on - strand, within ABZR88_RS17045at 4182.132 kb on + strand, within ABZR88_RS17045at 4182.139 kb on + strand, within ABZR88_RS17045at 4182.139 kb on + strand, within ABZR88_RS17045at 4182.277 kb on + strand, within ABZR88_RS17045at 4182.277 kb on + strand, within ABZR88_RS17045at 4182.331 kb on + strand, within ABZR88_RS17045at 4182.336 kb on - strand, within ABZR88_RS17045at 4182.344 kb on + strand, within ABZR88_RS17045at 4182.345 kb on - strand, within ABZR88_RS17045at 4182.762 kb on - strandat 4182.868 kb on + strandat 4182.907 kb on - strandat 4182.976 kb on + strandat 4183.139 kb on - strandat 4183.139 kb on - strandat 4183.303 kb on + strand, within ABZR88_RS17050at 4183.307 kb on + strand, within ABZR88_RS17050at 4183.457 kb on - strand, within ABZR88_RS17050at 4183.678 kb on + strand, within ABZR88_RS17050at 4183.684 kb on + strand, within ABZR88_RS17050

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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4,179,958 + +0.1
4,180,004 + -0.9
4,180,217 + -0.1
4,180,254 + -1.3
4,180,254 + -1.3
4,180,255 - -0.5
4,180,523 - ABZR88_RS17045 0.12 -1.7
4,180,535 - ABZR88_RS17045 0.12 -1.5
4,180,730 - ABZR88_RS17045 0.20 -1.5
4,180,750 - ABZR88_RS17045 0.21 -2.6
4,180,824 + ABZR88_RS17045 0.24 +0.4
4,180,889 + ABZR88_RS17045 0.26 -0.1
4,180,981 + ABZR88_RS17045 0.30 -1.3
4,180,994 - ABZR88_RS17045 0.30 -0.8
4,181,454 - ABZR88_RS17045 0.49 -2.6
4,181,518 + ABZR88_RS17045 0.51 -0.9
4,181,606 - ABZR88_RS17045 0.55 -0.1
4,181,615 - ABZR88_RS17045 0.55 -0.3
4,181,661 - ABZR88_RS17045 0.57 -1.5
4,181,794 + ABZR88_RS17045 0.62 -0.8
4,182,053 - ABZR88_RS17045 0.72 -0.5
4,182,132 + ABZR88_RS17045 0.76 -1.2
4,182,139 + ABZR88_RS17045 0.76 +0.1
4,182,139 + ABZR88_RS17045 0.76 -0.9
4,182,277 + ABZR88_RS17045 0.81 -0.5
4,182,277 + ABZR88_RS17045 0.81 -0.5
4,182,331 + ABZR88_RS17045 0.84 +0.5
4,182,336 - ABZR88_RS17045 0.84 +1.1
4,182,344 + ABZR88_RS17045 0.84 +1.9
4,182,345 - ABZR88_RS17045 0.84 -1.9
4,182,762 - -1.3
4,182,868 + -0.4
4,182,907 - -0.5
4,182,976 + -0.5
4,183,139 - -0.6
4,183,139 - +0.1
4,183,303 + ABZR88_RS17050 0.14 +0.5
4,183,307 + ABZR88_RS17050 0.14 -0.0
4,183,457 - ABZR88_RS17050 0.22 +0.8
4,183,678 + ABZR88_RS17050 0.34 +1.7
4,183,684 + ABZR88_RS17050 0.35 +1.3

Or see this region's nucleotide sequence