Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17040 and ABZR88_RS17045 are separated by 326 nucleotides ABZR88_RS17045 and ABZR88_RS17050 are separated by 313 nucleotides
ABZR88_RS17040: ABZR88_RS17040 - leucine--tRNA ligase, at 4,177,098 to 4,179,899
_RS17040
ABZR88_RS17045: ABZR88_RS17045 - TonB-dependent receptor, at 4,180,226 to 4,182,745
_RS17045
ABZR88_RS17050: ABZR88_RS17050 - DNA mismatch repair protein MutS, at 4,183,059 to 4,184,864
_RS17050
Position (kb)
4180
4181
4182
4183 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4179.958 kb on + strand at 4180.004 kb on + strand at 4180.217 kb on + strand at 4180.254 kb on + strand at 4180.254 kb on + strand at 4180.255 kb on - strand at 4180.523 kb on - strand, within ABZR88_RS17045 at 4180.535 kb on - strand, within ABZR88_RS17045 at 4180.730 kb on - strand, within ABZR88_RS17045 at 4180.750 kb on - strand, within ABZR88_RS17045 at 4180.824 kb on + strand, within ABZR88_RS17045 at 4180.889 kb on + strand, within ABZR88_RS17045 at 4180.981 kb on + strand, within ABZR88_RS17045 at 4180.994 kb on - strand, within ABZR88_RS17045 at 4181.454 kb on - strand, within ABZR88_RS17045 at 4181.518 kb on + strand, within ABZR88_RS17045 at 4181.606 kb on - strand, within ABZR88_RS17045 at 4181.615 kb on - strand, within ABZR88_RS17045 at 4181.661 kb on - strand, within ABZR88_RS17045 at 4181.794 kb on + strand, within ABZR88_RS17045 at 4182.053 kb on - strand, within ABZR88_RS17045 at 4182.132 kb on + strand, within ABZR88_RS17045 at 4182.139 kb on + strand, within ABZR88_RS17045 at 4182.139 kb on + strand, within ABZR88_RS17045 at 4182.277 kb on + strand, within ABZR88_RS17045 at 4182.277 kb on + strand, within ABZR88_RS17045 at 4182.331 kb on + strand, within ABZR88_RS17045 at 4182.336 kb on - strand, within ABZR88_RS17045 at 4182.344 kb on + strand, within ABZR88_RS17045 at 4182.345 kb on - strand, within ABZR88_RS17045 at 4182.762 kb on - strand at 4182.868 kb on + strand at 4182.907 kb on - strand at 4182.976 kb on + strand at 4183.139 kb on - strand at 4183.139 kb on - strand at 4183.303 kb on + strand, within ABZR88_RS17050 at 4183.307 kb on + strand, within ABZR88_RS17050 at 4183.457 kb on - strand, within ABZR88_RS17050 at 4183.678 kb on + strand, within ABZR88_RS17050 at 4183.684 kb on + strand, within ABZR88_RS17050
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 4,179,958 + +0.1 4,180,004 + -0.9 4,180,217 + -0.1 4,180,254 + -1.3 4,180,254 + -1.3 4,180,255 - -0.5 4,180,523 - ABZR88_RS17045 0.12 -1.7 4,180,535 - ABZR88_RS17045 0.12 -1.5 4,180,730 - ABZR88_RS17045 0.20 -1.5 4,180,750 - ABZR88_RS17045 0.21 -2.6 4,180,824 + ABZR88_RS17045 0.24 +0.4 4,180,889 + ABZR88_RS17045 0.26 -0.1 4,180,981 + ABZR88_RS17045 0.30 -1.3 4,180,994 - ABZR88_RS17045 0.30 -0.8 4,181,454 - ABZR88_RS17045 0.49 -2.6 4,181,518 + ABZR88_RS17045 0.51 -0.9 4,181,606 - ABZR88_RS17045 0.55 -0.1 4,181,615 - ABZR88_RS17045 0.55 -0.3 4,181,661 - ABZR88_RS17045 0.57 -1.5 4,181,794 + ABZR88_RS17045 0.62 -0.8 4,182,053 - ABZR88_RS17045 0.72 -0.5 4,182,132 + ABZR88_RS17045 0.76 -1.2 4,182,139 + ABZR88_RS17045 0.76 +0.1 4,182,139 + ABZR88_RS17045 0.76 -0.9 4,182,277 + ABZR88_RS17045 0.81 -0.5 4,182,277 + ABZR88_RS17045 0.81 -0.5 4,182,331 + ABZR88_RS17045 0.84 +0.5 4,182,336 - ABZR88_RS17045 0.84 +1.1 4,182,344 + ABZR88_RS17045 0.84 +1.9 4,182,345 - ABZR88_RS17045 0.84 -1.9 4,182,762 - -1.3 4,182,868 + -0.4 4,182,907 - -0.5 4,182,976 + -0.5 4,183,139 - -0.6 4,183,139 - +0.1 4,183,303 + ABZR88_RS17050 0.14 +0.5 4,183,307 + ABZR88_RS17050 0.14 -0.0 4,183,457 - ABZR88_RS17050 0.22 +0.8 4,183,678 + ABZR88_RS17050 0.34 +1.7 4,183,684 + ABZR88_RS17050 0.35 +1.3
Or see this region's nucleotide sequence