Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13040

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13030 and ABZR88_RS13035 are separated by 13 nucleotidesABZR88_RS13035 and ABZR88_RS13040 are separated by 8 nucleotidesABZR88_RS13040 and ABZR88_RS13045 overlap by 1 nucleotides ABZR88_RS13030: ABZR88_RS13030 - SDR family NAD(P)-dependent oxidoreductase, at 3,220,125 to 3,220,883 _RS13030 ABZR88_RS13035: ABZR88_RS13035 - RraA family protein, at 3,220,897 to 3,221,589 _RS13035 ABZR88_RS13040: ABZR88_RS13040 - glucuronate isomerase, at 3,221,598 to 3,223,010 _RS13040 ABZR88_RS13045: ABZR88_RS13045 - enolase C-terminal domain-like protein, at 3,223,010 to 3,224,137 _RS13045 Position (kb) 3221 3222 3223 3224Strain fitness (log2 ratio) -1 0 1at 3220.772 kb on + strand, within ABZR88_RS13030at 3220.845 kb on + strandat 3220.883 kb on + strandat 3220.939 kb on - strandat 3221.056 kb on + strand, within ABZR88_RS13035at 3221.207 kb on + strand, within ABZR88_RS13035at 3221.479 kb on + strand, within ABZR88_RS13035at 3221.505 kb on + strand, within ABZR88_RS13035at 3221.773 kb on - strand, within ABZR88_RS13040at 3221.819 kb on + strand, within ABZR88_RS13040at 3222.158 kb on + strand, within ABZR88_RS13040at 3222.256 kb on + strand, within ABZR88_RS13040at 3222.353 kb on - strand, within ABZR88_RS13040at 3222.468 kb on + strand, within ABZR88_RS13040at 3222.519 kb on - strand, within ABZR88_RS13040at 3222.626 kb on + strand, within ABZR88_RS13040at 3222.678 kb on - strand, within ABZR88_RS13040at 3222.794 kb on + strand, within ABZR88_RS13040at 3222.913 kb on - strandat 3222.934 kb on + strandat 3222.957 kb on + strandat 3222.990 kb on + strandat 3223.037 kb on - strandat 3223.111 kb on + strandat 3223.207 kb on + strand, within ABZR88_RS13045at 3223.237 kb on + strand, within ABZR88_RS13045at 3223.343 kb on - strand, within ABZR88_RS13045at 3223.397 kb on - strand, within ABZR88_RS13045at 3223.522 kb on + strand, within ABZR88_RS13045at 3223.540 kb on + strand, within ABZR88_RS13045at 3223.541 kb on - strand, within ABZR88_RS13045at 3223.583 kb on + strand, within ABZR88_RS13045at 3223.584 kb on - strand, within ABZR88_RS13045at 3223.584 kb on - strand, within ABZR88_RS13045at 3223.651 kb on - strand, within ABZR88_RS13045at 3223.674 kb on + strand, within ABZR88_RS13045at 3223.771 kb on - strand, within ABZR88_RS13045at 3223.948 kb on - strand, within ABZR88_RS13045

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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3,220,772 + ABZR88_RS13030 0.85 +0.3
3,220,845 + -0.1
3,220,883 + +0.3
3,220,939 - -1.2
3,221,056 + ABZR88_RS13035 0.23 +0.7
3,221,207 + ABZR88_RS13035 0.45 -0.0
3,221,479 + ABZR88_RS13035 0.84 -0.1
3,221,505 + ABZR88_RS13035 0.88 -0.3
3,221,773 - ABZR88_RS13040 0.12 -1.2
3,221,819 + ABZR88_RS13040 0.16 +0.3
3,222,158 + ABZR88_RS13040 0.40 -0.2
3,222,256 + ABZR88_RS13040 0.47 +0.2
3,222,353 - ABZR88_RS13040 0.53 -0.9
3,222,468 + ABZR88_RS13040 0.62 -0.4
3,222,519 - ABZR88_RS13040 0.65 -0.7
3,222,626 + ABZR88_RS13040 0.73 -1.7
3,222,678 - ABZR88_RS13040 0.76 -0.8
3,222,794 + ABZR88_RS13040 0.85 -0.3
3,222,913 - +0.1
3,222,934 + -0.2
3,222,957 + -0.0
3,222,990 + -0.2
3,223,037 - +0.1
3,223,111 + -0.0
3,223,207 + ABZR88_RS13045 0.17 +0.6
3,223,237 + ABZR88_RS13045 0.20 -1.2
3,223,343 - ABZR88_RS13045 0.30 -0.5
3,223,397 - ABZR88_RS13045 0.34 +0.1
3,223,522 + ABZR88_RS13045 0.45 -0.1
3,223,540 + ABZR88_RS13045 0.47 -0.3
3,223,541 - ABZR88_RS13045 0.47 -0.5
3,223,583 + ABZR88_RS13045 0.51 -0.4
3,223,584 - ABZR88_RS13045 0.51 -0.1
3,223,584 - ABZR88_RS13045 0.51 -0.3
3,223,651 - ABZR88_RS13045 0.57 -0.4
3,223,674 + ABZR88_RS13045 0.59 -0.0
3,223,771 - ABZR88_RS13045 0.67 +0.4
3,223,948 - ABZR88_RS13045 0.83 +0.1

Or see this region's nucleotide sequence