Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13030 and ABZR88_RS13035 are separated by 13 nucleotides ABZR88_RS13035 and ABZR88_RS13040 are separated by 8 nucleotides ABZR88_RS13040 and ABZR88_RS13045 overlap by 1 nucleotides
ABZR88_RS13030: ABZR88_RS13030 - SDR family NAD(P)-dependent oxidoreductase, at 3,220,125 to 3,220,883
_RS13030
ABZR88_RS13035: ABZR88_RS13035 - RraA family protein, at 3,220,897 to 3,221,589
_RS13035
ABZR88_RS13040: ABZR88_RS13040 - glucuronate isomerase, at 3,221,598 to 3,223,010
_RS13040
ABZR88_RS13045: ABZR88_RS13045 - enolase C-terminal domain-like protein, at 3,223,010 to 3,224,137
_RS13045
Position (kb)
3221
3222
3223
3224 Strain fitness (log2 ratio)
-1
0
1 at 3220.772 kb on + strand, within ABZR88_RS13030 at 3220.845 kb on + strand at 3220.883 kb on + strand at 3220.939 kb on - strand at 3221.056 kb on + strand, within ABZR88_RS13035 at 3221.207 kb on + strand, within ABZR88_RS13035 at 3221.479 kb on + strand, within ABZR88_RS13035 at 3221.505 kb on + strand, within ABZR88_RS13035 at 3221.773 kb on - strand, within ABZR88_RS13040 at 3221.819 kb on + strand, within ABZR88_RS13040 at 3222.158 kb on + strand, within ABZR88_RS13040 at 3222.256 kb on + strand, within ABZR88_RS13040 at 3222.353 kb on - strand, within ABZR88_RS13040 at 3222.468 kb on + strand, within ABZR88_RS13040 at 3222.519 kb on - strand, within ABZR88_RS13040 at 3222.626 kb on + strand, within ABZR88_RS13040 at 3222.678 kb on - strand, within ABZR88_RS13040 at 3222.794 kb on + strand, within ABZR88_RS13040 at 3222.913 kb on - strand at 3222.934 kb on + strand at 3222.957 kb on + strand at 3222.990 kb on + strand at 3223.037 kb on - strand at 3223.111 kb on + strand at 3223.207 kb on + strand, within ABZR88_RS13045 at 3223.237 kb on + strand, within ABZR88_RS13045 at 3223.343 kb on - strand, within ABZR88_RS13045 at 3223.397 kb on - strand, within ABZR88_RS13045 at 3223.522 kb on + strand, within ABZR88_RS13045 at 3223.540 kb on + strand, within ABZR88_RS13045 at 3223.541 kb on - strand, within ABZR88_RS13045 at 3223.583 kb on + strand, within ABZR88_RS13045 at 3223.584 kb on - strand, within ABZR88_RS13045 at 3223.584 kb on - strand, within ABZR88_RS13045 at 3223.651 kb on - strand, within ABZR88_RS13045 at 3223.674 kb on + strand, within ABZR88_RS13045 at 3223.771 kb on - strand, within ABZR88_RS13045 at 3223.948 kb on - strand, within ABZR88_RS13045
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 3,220,772 + ABZR88_RS13030 0.85 +0.3 3,220,845 + -0.1 3,220,883 + +0.3 3,220,939 - -1.2 3,221,056 + ABZR88_RS13035 0.23 +0.7 3,221,207 + ABZR88_RS13035 0.45 -0.0 3,221,479 + ABZR88_RS13035 0.84 -0.1 3,221,505 + ABZR88_RS13035 0.88 -0.3 3,221,773 - ABZR88_RS13040 0.12 -1.2 3,221,819 + ABZR88_RS13040 0.16 +0.3 3,222,158 + ABZR88_RS13040 0.40 -0.2 3,222,256 + ABZR88_RS13040 0.47 +0.2 3,222,353 - ABZR88_RS13040 0.53 -0.9 3,222,468 + ABZR88_RS13040 0.62 -0.4 3,222,519 - ABZR88_RS13040 0.65 -0.7 3,222,626 + ABZR88_RS13040 0.73 -1.7 3,222,678 - ABZR88_RS13040 0.76 -0.8 3,222,794 + ABZR88_RS13040 0.85 -0.3 3,222,913 - +0.1 3,222,934 + -0.2 3,222,957 + -0.0 3,222,990 + -0.2 3,223,037 - +0.1 3,223,111 + -0.0 3,223,207 + ABZR88_RS13045 0.17 +0.6 3,223,237 + ABZR88_RS13045 0.20 -1.2 3,223,343 - ABZR88_RS13045 0.30 -0.5 3,223,397 - ABZR88_RS13045 0.34 +0.1 3,223,522 + ABZR88_RS13045 0.45 -0.1 3,223,540 + ABZR88_RS13045 0.47 -0.3 3,223,541 - ABZR88_RS13045 0.47 -0.5 3,223,583 + ABZR88_RS13045 0.51 -0.4 3,223,584 - ABZR88_RS13045 0.51 -0.1 3,223,584 - ABZR88_RS13045 0.51 -0.3 3,223,651 - ABZR88_RS13045 0.57 -0.4 3,223,674 + ABZR88_RS13045 0.59 -0.0 3,223,771 - ABZR88_RS13045 0.67 +0.4 3,223,948 - ABZR88_RS13045 0.83 +0.1
Or see this region's nucleotide sequence