Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11345

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS11340 and ABZR88_RS11345 are separated by 50 nucleotidesABZR88_RS11345 and ABZR88_RS11350 are separated by 78 nucleotidesABZR88_RS11350 and ABZR88_RS11355 are separated by 115 nucleotides ABZR88_RS11340: ABZR88_RS11340 - MFS transporter, at 2,789,286 to 2,790,500 _RS11340 ABZR88_RS11345: ABZR88_RS11345 - FadR/GntR family transcriptional regulator, at 2,790,551 to 2,791,204 _RS11345 ABZR88_RS11350: ABZR88_RS11350 - DUF1801 domain-containing protein, at 2,791,283 to 2,791,714 _RS11350 ABZR88_RS11355: ABZR88_RS11355 - hypothetical protein, at 2,791,830 to 2,792,858 _RS11355 Position (kb) 2790 2791 2792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2789.579 kb on - strand, within ABZR88_RS11340at 2789.671 kb on - strand, within ABZR88_RS11340at 2789.765 kb on - strand, within ABZR88_RS11340at 2789.767 kb on + strand, within ABZR88_RS11340at 2789.767 kb on + strand, within ABZR88_RS11340at 2789.788 kb on + strand, within ABZR88_RS11340at 2789.795 kb on - strand, within ABZR88_RS11340at 2789.905 kb on - strand, within ABZR88_RS11340at 2789.946 kb on - strand, within ABZR88_RS11340at 2789.983 kb on + strand, within ABZR88_RS11340at 2790.147 kb on - strand, within ABZR88_RS11340at 2790.151 kb on - strand, within ABZR88_RS11340at 2790.222 kb on - strand, within ABZR88_RS11340at 2790.264 kb on - strand, within ABZR88_RS11340at 2790.270 kb on - strand, within ABZR88_RS11340at 2790.372 kb on - strand, within ABZR88_RS11340at 2790.442 kb on - strandat 2790.552 kb on + strandat 2790.566 kb on + strandat 2790.664 kb on + strand, within ABZR88_RS11345at 2790.671 kb on - strand, within ABZR88_RS11345at 2790.671 kb on - strand, within ABZR88_RS11345at 2790.674 kb on + strand, within ABZR88_RS11345at 2790.675 kb on - strand, within ABZR88_RS11345at 2790.717 kb on + strand, within ABZR88_RS11345at 2790.762 kb on - strand, within ABZR88_RS11345at 2790.941 kb on - strand, within ABZR88_RS11345at 2791.049 kb on - strand, within ABZR88_RS11345at 2791.132 kb on - strand, within ABZR88_RS11345at 2791.169 kb on + strandat 2791.206 kb on - strandat 2791.288 kb on - strandat 2791.331 kb on + strand, within ABZR88_RS11350at 2791.332 kb on - strand, within ABZR88_RS11350at 2791.353 kb on - strand, within ABZR88_RS11350at 2791.367 kb on - strand, within ABZR88_RS11350at 2791.527 kb on - strand, within ABZR88_RS11350at 2791.527 kb on - strand, within ABZR88_RS11350at 2791.629 kb on - strand, within ABZR88_RS11350at 2791.687 kb on - strandat 2791.721 kb on + strandat 2791.736 kb on + strandat 2791.741 kb on - strandat 2791.974 kb on - strand, within ABZR88_RS11355at 2791.977 kb on + strand, within ABZR88_RS11355at 2791.977 kb on + strand, within ABZR88_RS11355at 2792.042 kb on - strand, within ABZR88_RS11355at 2792.100 kb on + strand, within ABZR88_RS11355

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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2,789,579 - ABZR88_RS11340 0.24 -0.3
2,789,671 - ABZR88_RS11340 0.32 -0.9
2,789,765 - ABZR88_RS11340 0.39 +0.1
2,789,767 + ABZR88_RS11340 0.40 +0.3
2,789,767 + ABZR88_RS11340 0.40 +1.3
2,789,788 + ABZR88_RS11340 0.41 +0.1
2,789,795 - ABZR88_RS11340 0.42 -0.1
2,789,905 - ABZR88_RS11340 0.51 -0.2
2,789,946 - ABZR88_RS11340 0.54 +1.1
2,789,983 + ABZR88_RS11340 0.57 +0.4
2,790,147 - ABZR88_RS11340 0.71 +0.0
2,790,151 - ABZR88_RS11340 0.71 -0.2
2,790,222 - ABZR88_RS11340 0.77 -0.4
2,790,264 - ABZR88_RS11340 0.80 -0.5
2,790,270 - ABZR88_RS11340 0.81 +0.1
2,790,372 - ABZR88_RS11340 0.89 +0.1
2,790,442 - -0.6
2,790,552 + +0.2
2,790,566 + -0.1
2,790,664 + ABZR88_RS11345 0.17 +2.1
2,790,671 - ABZR88_RS11345 0.18 -2.2
2,790,671 - ABZR88_RS11345 0.18 -2.1
2,790,674 + ABZR88_RS11345 0.19 +0.0
2,790,675 - ABZR88_RS11345 0.19 +1.1
2,790,717 + ABZR88_RS11345 0.25 +0.1
2,790,762 - ABZR88_RS11345 0.32 -1.9
2,790,941 - ABZR88_RS11345 0.60 -2.1
2,791,049 - ABZR88_RS11345 0.76 -1.2
2,791,132 - ABZR88_RS11345 0.89 -3.0
2,791,169 + +0.1
2,791,206 - +1.1
2,791,288 - +0.1
2,791,331 + ABZR88_RS11350 0.11 +0.2
2,791,332 - ABZR88_RS11350 0.11 -0.0
2,791,353 - ABZR88_RS11350 0.16 +0.3
2,791,367 - ABZR88_RS11350 0.19 +0.0
2,791,527 - ABZR88_RS11350 0.56 +1.7
2,791,527 - ABZR88_RS11350 0.56 +0.0
2,791,629 - ABZR88_RS11350 0.80 +0.6
2,791,687 - +0.1
2,791,721 + -0.8
2,791,736 + +0.1
2,791,741 - -0.4
2,791,974 - ABZR88_RS11355 0.14 -0.0
2,791,977 + ABZR88_RS11355 0.14 -0.4
2,791,977 + ABZR88_RS11355 0.14 +0.1
2,792,042 - ABZR88_RS11355 0.21 +0.0
2,792,100 + ABZR88_RS11355 0.26 -0.1

Or see this region's nucleotide sequence