Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11340 and ABZR88_RS11345 are separated by 50 nucleotides ABZR88_RS11345 and ABZR88_RS11350 are separated by 78 nucleotides ABZR88_RS11350 and ABZR88_RS11355 are separated by 115 nucleotides
ABZR88_RS11340: ABZR88_RS11340 - MFS transporter, at 2,789,286 to 2,790,500
_RS11340
ABZR88_RS11345: ABZR88_RS11345 - FadR/GntR family transcriptional regulator, at 2,790,551 to 2,791,204
_RS11345
ABZR88_RS11350: ABZR88_RS11350 - DUF1801 domain-containing protein, at 2,791,283 to 2,791,714
_RS11350
ABZR88_RS11355: ABZR88_RS11355 - hypothetical protein, at 2,791,830 to 2,792,858
_RS11355
Position (kb)
2790
2791
2792 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2789.579 kb on - strand, within ABZR88_RS11340 at 2789.671 kb on - strand, within ABZR88_RS11340 at 2789.765 kb on - strand, within ABZR88_RS11340 at 2789.767 kb on + strand, within ABZR88_RS11340 at 2789.767 kb on + strand, within ABZR88_RS11340 at 2789.788 kb on + strand, within ABZR88_RS11340 at 2789.795 kb on - strand, within ABZR88_RS11340 at 2789.905 kb on - strand, within ABZR88_RS11340 at 2789.946 kb on - strand, within ABZR88_RS11340 at 2789.983 kb on + strand, within ABZR88_RS11340 at 2790.147 kb on - strand, within ABZR88_RS11340 at 2790.151 kb on - strand, within ABZR88_RS11340 at 2790.222 kb on - strand, within ABZR88_RS11340 at 2790.264 kb on - strand, within ABZR88_RS11340 at 2790.270 kb on - strand, within ABZR88_RS11340 at 2790.372 kb on - strand, within ABZR88_RS11340 at 2790.442 kb on - strand at 2790.552 kb on + strand at 2790.566 kb on + strand at 2790.664 kb on + strand, within ABZR88_RS11345 at 2790.671 kb on - strand, within ABZR88_RS11345 at 2790.671 kb on - strand, within ABZR88_RS11345 at 2790.674 kb on + strand, within ABZR88_RS11345 at 2790.675 kb on - strand, within ABZR88_RS11345 at 2790.717 kb on + strand, within ABZR88_RS11345 at 2790.762 kb on - strand, within ABZR88_RS11345 at 2790.941 kb on - strand, within ABZR88_RS11345 at 2791.049 kb on - strand, within ABZR88_RS11345 at 2791.132 kb on - strand, within ABZR88_RS11345 at 2791.169 kb on + strand at 2791.206 kb on - strand at 2791.288 kb on - strand at 2791.331 kb on + strand, within ABZR88_RS11350 at 2791.332 kb on - strand, within ABZR88_RS11350 at 2791.353 kb on - strand, within ABZR88_RS11350 at 2791.367 kb on - strand, within ABZR88_RS11350 at 2791.527 kb on - strand, within ABZR88_RS11350 at 2791.527 kb on - strand, within ABZR88_RS11350 at 2791.629 kb on - strand, within ABZR88_RS11350 at 2791.687 kb on - strand at 2791.721 kb on + strand at 2791.736 kb on + strand at 2791.741 kb on - strand at 2791.974 kb on - strand, within ABZR88_RS11355 at 2791.977 kb on + strand, within ABZR88_RS11355 at 2791.977 kb on + strand, within ABZR88_RS11355 at 2792.042 kb on - strand, within ABZR88_RS11355 at 2792.100 kb on + strand, within ABZR88_RS11355
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 2,789,579 - ABZR88_RS11340 0.24 -0.3 2,789,671 - ABZR88_RS11340 0.32 -0.9 2,789,765 - ABZR88_RS11340 0.39 +0.1 2,789,767 + ABZR88_RS11340 0.40 +0.3 2,789,767 + ABZR88_RS11340 0.40 +1.3 2,789,788 + ABZR88_RS11340 0.41 +0.1 2,789,795 - ABZR88_RS11340 0.42 -0.1 2,789,905 - ABZR88_RS11340 0.51 -0.2 2,789,946 - ABZR88_RS11340 0.54 +1.1 2,789,983 + ABZR88_RS11340 0.57 +0.4 2,790,147 - ABZR88_RS11340 0.71 +0.0 2,790,151 - ABZR88_RS11340 0.71 -0.2 2,790,222 - ABZR88_RS11340 0.77 -0.4 2,790,264 - ABZR88_RS11340 0.80 -0.5 2,790,270 - ABZR88_RS11340 0.81 +0.1 2,790,372 - ABZR88_RS11340 0.89 +0.1 2,790,442 - -0.6 2,790,552 + +0.2 2,790,566 + -0.1 2,790,664 + ABZR88_RS11345 0.17 +2.1 2,790,671 - ABZR88_RS11345 0.18 -2.2 2,790,671 - ABZR88_RS11345 0.18 -2.1 2,790,674 + ABZR88_RS11345 0.19 +0.0 2,790,675 - ABZR88_RS11345 0.19 +1.1 2,790,717 + ABZR88_RS11345 0.25 +0.1 2,790,762 - ABZR88_RS11345 0.32 -1.9 2,790,941 - ABZR88_RS11345 0.60 -2.1 2,791,049 - ABZR88_RS11345 0.76 -1.2 2,791,132 - ABZR88_RS11345 0.89 -3.0 2,791,169 + +0.1 2,791,206 - +1.1 2,791,288 - +0.1 2,791,331 + ABZR88_RS11350 0.11 +0.2 2,791,332 - ABZR88_RS11350 0.11 -0.0 2,791,353 - ABZR88_RS11350 0.16 +0.3 2,791,367 - ABZR88_RS11350 0.19 +0.0 2,791,527 - ABZR88_RS11350 0.56 +1.7 2,791,527 - ABZR88_RS11350 0.56 +0.0 2,791,629 - ABZR88_RS11350 0.80 +0.6 2,791,687 - +0.1 2,791,721 + -0.8 2,791,736 + +0.1 2,791,741 - -0.4 2,791,974 - ABZR88_RS11355 0.14 -0.0 2,791,977 + ABZR88_RS11355 0.14 -0.4 2,791,977 + ABZR88_RS11355 0.14 +0.1 2,792,042 - ABZR88_RS11355 0.21 +0.0 2,792,100 + ABZR88_RS11355 0.26 -0.1
Or see this region's nucleotide sequence