Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10975 and ABZR88_RS10980 are separated by 55 nucleotides ABZR88_RS10980 and ABZR88_RS10985 are separated by 18 nucleotides ABZR88_RS10985 and ABZR88_RS10990 are separated by 25 nucleotides ABZR88_RS10990 and ABZR88_RS10995 are separated by 48 nucleotides
ABZR88_RS10975: ABZR88_RS10975 - hypothetical protein, at 2,675,624 to 2,676,703
_RS10975
ABZR88_RS10980: ABZR88_RS10980 - PRTRC system protein C, at 2,676,759 to 2,676,974
_RS10980
ABZR88_RS10985: ABZR88_RS10985 - hypothetical protein, at 2,676,993 to 2,677,544
_RS10985
ABZR88_RS10990: ABZR88_RS10990 - hypothetical protein, at 2,677,570 to 2,677,824
_RS10990
ABZR88_RS10995: ABZR88_RS10995 - DUF932 domain-containing protein, at 2,677,873 to 2,678,616
_RS10995
Position (kb)
2676
2677
2678 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2676.040 kb on + strand, within ABZR88_RS10975 at 2676.040 kb on + strand, within ABZR88_RS10975 at 2676.207 kb on + strand, within ABZR88_RS10975 at 2676.295 kb on - strand, within ABZR88_RS10975 at 2676.434 kb on - strand, within ABZR88_RS10975 at 2676.435 kb on + strand, within ABZR88_RS10975 at 2676.436 kb on - strand, within ABZR88_RS10975 at 2676.712 kb on - strand at 2676.813 kb on - strand, within ABZR88_RS10980 at 2676.813 kb on - strand, within ABZR88_RS10980 at 2676.814 kb on + strand, within ABZR88_RS10980 at 2676.855 kb on + strand, within ABZR88_RS10980 at 2676.856 kb on - strand, within ABZR88_RS10980 at 2676.866 kb on - strand, within ABZR88_RS10980 at 2676.918 kb on + strand, within ABZR88_RS10980 at 2676.941 kb on - strand, within ABZR88_RS10980 at 2676.977 kb on + strand at 2676.978 kb on - strand at 2676.999 kb on + strand at 2677.078 kb on + strand, within ABZR88_RS10985 at 2677.165 kb on + strand, within ABZR88_RS10985 at 2677.246 kb on - strand, within ABZR88_RS10985 at 2677.568 kb on - strand at 2677.648 kb on - strand, within ABZR88_RS10990 at 2677.692 kb on + strand, within ABZR88_RS10990 at 2677.800 kb on + strand at 2677.886 kb on + strand at 2678.099 kb on + strand, within ABZR88_RS10995 at 2678.100 kb on - strand, within ABZR88_RS10995 at 2678.121 kb on + strand, within ABZR88_RS10995 at 2678.239 kb on + strand, within ABZR88_RS10995 at 2678.240 kb on - strand, within ABZR88_RS10995 at 2678.367 kb on + strand, within ABZR88_RS10995 at 2678.400 kb on + strand, within ABZR88_RS10995 at 2678.400 kb on + strand, within ABZR88_RS10995 at 2678.400 kb on + strand, within ABZR88_RS10995 at 2678.400 kb on + strand, within ABZR88_RS10995 at 2678.400 kb on + strand, within ABZR88_RS10995 at 2678.405 kb on - strand, within ABZR88_RS10995
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 2,676,040 + ABZR88_RS10975 0.39 -0.4 2,676,040 + ABZR88_RS10975 0.39 -0.3 2,676,207 + ABZR88_RS10975 0.54 -0.6 2,676,295 - ABZR88_RS10975 0.62 +0.4 2,676,434 - ABZR88_RS10975 0.75 -0.8 2,676,435 + ABZR88_RS10975 0.75 -1.9 2,676,436 - ABZR88_RS10975 0.75 -0.1 2,676,712 - -1.4 2,676,813 - ABZR88_RS10980 0.25 +0.8 2,676,813 - ABZR88_RS10980 0.25 -0.6 2,676,814 + ABZR88_RS10980 0.25 -0.3 2,676,855 + ABZR88_RS10980 0.44 +0.1 2,676,856 - ABZR88_RS10980 0.45 +0.5 2,676,866 - ABZR88_RS10980 0.50 -0.5 2,676,918 + ABZR88_RS10980 0.74 -0.5 2,676,941 - ABZR88_RS10980 0.84 -0.9 2,676,977 + +0.7 2,676,978 - -0.6 2,676,999 + -0.7 2,677,078 + ABZR88_RS10985 0.15 -0.7 2,677,165 + ABZR88_RS10985 0.31 -3.0 2,677,246 - ABZR88_RS10985 0.46 -0.1 2,677,568 - -1.2 2,677,648 - ABZR88_RS10990 0.31 -0.0 2,677,692 + ABZR88_RS10990 0.48 -1.2 2,677,800 + -1.9 2,677,886 + -0.4 2,678,099 + ABZR88_RS10995 0.30 +0.4 2,678,100 - ABZR88_RS10995 0.31 -0.5 2,678,121 + ABZR88_RS10995 0.33 +0.3 2,678,239 + ABZR88_RS10995 0.49 +0.2 2,678,240 - ABZR88_RS10995 0.49 -0.1 2,678,367 + ABZR88_RS10995 0.66 -0.1 2,678,400 + ABZR88_RS10995 0.71 -0.5 2,678,400 + ABZR88_RS10995 0.71 -0.1 2,678,400 + ABZR88_RS10995 0.71 +0.3 2,678,400 + ABZR88_RS10995 0.71 +0.2 2,678,400 + ABZR88_RS10995 0.71 -0.8 2,678,405 - ABZR88_RS10995 0.72 -0.6
Or see this region's nucleotide sequence