Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08715 and ABZR88_RS08720 are separated by 35 nucleotides ABZR88_RS08720 and ABZR88_RS08725 are separated by 21 nucleotides
ABZR88_RS08715: ABZR88_RS08715 - sulfatase, at 2,181,735 to 2,183,195
_RS08715
ABZR88_RS08720: ABZR88_RS08720 - carbohydrate-binding family 9-like protein, at 2,183,231 to 2,183,905
_RS08720
ABZR88_RS08725: ABZR88_RS08725 - polysaccharide lyase family 8 super-sandwich domain-containing protein, at 2,183,927 to 2,186,143
_RS08725
Position (kb)
2183
2184 Strain fitness (log2 ratio)
-2
-1
0
1 at 2182.337 kb on - strand, within ABZR88_RS08715 at 2182.578 kb on + strand, within ABZR88_RS08715 at 2182.731 kb on - strand, within ABZR88_RS08715 at 2183.003 kb on + strand, within ABZR88_RS08715 at 2183.004 kb on - strand, within ABZR88_RS08715 at 2183.193 kb on + strand at 2183.254 kb on + strand at 2183.264 kb on - strand at 2183.264 kb on - strand at 2183.264 kb on - strand at 2183.266 kb on - strand at 2183.419 kb on - strand, within ABZR88_RS08720 at 2183.423 kb on + strand, within ABZR88_RS08720 at 2183.424 kb on - strand, within ABZR88_RS08720 at 2183.481 kb on - strand, within ABZR88_RS08720 at 2183.532 kb on - strand, within ABZR88_RS08720 at 2183.943 kb on + strand at 2183.948 kb on + strand at 2184.166 kb on + strand, within ABZR88_RS08725 at 2184.182 kb on - strand, within ABZR88_RS08725 at 2184.182 kb on - strand, within ABZR88_RS08725 at 2184.182 kb on - strand, within ABZR88_RS08725 at 2184.266 kb on + strand, within ABZR88_RS08725 at 2184.318 kb on - strand, within ABZR88_RS08725 at 2184.348 kb on - strand, within ABZR88_RS08725 at 2184.553 kb on + strand, within ABZR88_RS08725 at 2184.710 kb on - strand, within ABZR88_RS08725 at 2184.737 kb on + strand, within ABZR88_RS08725 at 2184.738 kb on - strand, within ABZR88_RS08725 at 2184.777 kb on - strand, within ABZR88_RS08725 at 2184.864 kb on + strand, within ABZR88_RS08725
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 2,182,337 - ABZR88_RS08715 0.41 -0.5 2,182,578 + ABZR88_RS08715 0.58 +1.1 2,182,731 - ABZR88_RS08715 0.68 +0.8 2,183,003 + ABZR88_RS08715 0.87 -0.0 2,183,004 - ABZR88_RS08715 0.87 +0.2 2,183,193 + -0.1 2,183,254 + +0.1 2,183,264 - -0.3 2,183,264 - -0.2 2,183,264 - +0.8 2,183,266 - -0.0 2,183,419 - ABZR88_RS08720 0.28 -2.2 2,183,423 + ABZR88_RS08720 0.28 -1.9 2,183,424 - ABZR88_RS08720 0.29 -0.9 2,183,481 - ABZR88_RS08720 0.37 -0.4 2,183,532 - ABZR88_RS08720 0.45 -0.3 2,183,943 + +0.2 2,183,948 + +0.7 2,184,166 + ABZR88_RS08725 0.11 +0.1 2,184,182 - ABZR88_RS08725 0.12 +1.1 2,184,182 - ABZR88_RS08725 0.12 -0.2 2,184,182 - ABZR88_RS08725 0.12 +0.1 2,184,266 + ABZR88_RS08725 0.15 -0.6 2,184,318 - ABZR88_RS08725 0.18 -0.1 2,184,348 - ABZR88_RS08725 0.19 -0.9 2,184,553 + ABZR88_RS08725 0.28 +0.6 2,184,710 - ABZR88_RS08725 0.35 -0.4 2,184,737 + ABZR88_RS08725 0.37 +0.0 2,184,738 - ABZR88_RS08725 0.37 -0.5 2,184,777 - ABZR88_RS08725 0.38 +0.6 2,184,864 + ABZR88_RS08725 0.42 +0.5
Or see this region's nucleotide sequence