Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08040 and ABZR88_RS08045 are separated by 71 nucleotides ABZR88_RS08045 and ABZR88_RS08050 are separated by 268 nucleotides
ABZR88_RS08040: ABZR88_RS08040 - glycosyl hydrolase family 28 protein, at 1,993,232 to 1,994,593
_RS08040
ABZR88_RS08045: ABZR88_RS08045 - family 43 glycosylhydrolase, at 1,994,665 to 1,995,660
_RS08045
ABZR88_RS08050: ABZR88_RS08050 - family 43 glycosylhydrolase, at 1,995,929 to 1,998,373
_RS08050
Position (kb)
1994
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.693 kb on + strand, within ABZR88_RS08040 at 1993.785 kb on + strand, within ABZR88_RS08040 at 1993.786 kb on - strand, within ABZR88_RS08040 at 1993.917 kb on - strand, within ABZR88_RS08040 at 1993.947 kb on + strand, within ABZR88_RS08040 at 1994.030 kb on + strand, within ABZR88_RS08040 at 1994.031 kb on - strand, within ABZR88_RS08040 at 1994.044 kb on + strand, within ABZR88_RS08040 at 1994.045 kb on - strand, within ABZR88_RS08040 at 1994.136 kb on + strand, within ABZR88_RS08040 at 1994.328 kb on - strand, within ABZR88_RS08040 at 1994.420 kb on + strand, within ABZR88_RS08040 at 1994.482 kb on + strand at 1994.482 kb on + strand at 1994.483 kb on - strand at 1994.801 kb on - strand, within ABZR88_RS08045 at 1994.816 kb on + strand, within ABZR88_RS08045 at 1995.089 kb on + strand, within ABZR88_RS08045 at 1995.175 kb on - strand, within ABZR88_RS08045 at 1995.289 kb on + strand, within ABZR88_RS08045 at 1995.290 kb on - strand, within ABZR88_RS08045 at 1995.303 kb on - strand, within ABZR88_RS08045 at 1995.487 kb on - strand, within ABZR88_RS08045 at 1995.625 kb on - strand at 1995.645 kb on - strand at 1995.687 kb on - strand at 1995.822 kb on + strand at 1995.907 kb on + strand at 1995.987 kb on - strand at 1996.201 kb on + strand, within ABZR88_RS08050 at 1996.211 kb on + strand, within ABZR88_RS08050 at 1996.221 kb on - strand, within ABZR88_RS08050 at 1996.242 kb on + strand, within ABZR88_RS08050 at 1996.242 kb on + strand, within ABZR88_RS08050 at 1996.267 kb on + strand, within ABZR88_RS08050 at 1996.303 kb on - strand, within ABZR88_RS08050 at 1996.462 kb on - strand, within ABZR88_RS08050 at 1996.519 kb on + strand, within ABZR88_RS08050 at 1996.520 kb on - strand, within ABZR88_RS08050 at 1996.572 kb on + strand, within ABZR88_RS08050
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 1,993,693 + ABZR88_RS08040 0.34 +0.4 1,993,785 + ABZR88_RS08040 0.41 -1.5 1,993,786 - ABZR88_RS08040 0.41 -0.5 1,993,917 - ABZR88_RS08040 0.50 +0.4 1,993,947 + ABZR88_RS08040 0.52 -0.6 1,994,030 + ABZR88_RS08040 0.59 -2.5 1,994,031 - ABZR88_RS08040 0.59 +0.3 1,994,044 + ABZR88_RS08040 0.60 -0.5 1,994,045 - ABZR88_RS08040 0.60 +0.4 1,994,136 + ABZR88_RS08040 0.66 +0.5 1,994,328 - ABZR88_RS08040 0.80 +0.7 1,994,420 + ABZR88_RS08040 0.87 -0.5 1,994,482 + +0.0 1,994,482 + +0.8 1,994,483 - -0.3 1,994,801 - ABZR88_RS08045 0.14 +0.1 1,994,816 + ABZR88_RS08045 0.15 +1.1 1,995,089 + ABZR88_RS08045 0.43 +1.1 1,995,175 - ABZR88_RS08045 0.51 -0.2 1,995,289 + ABZR88_RS08045 0.63 -0.1 1,995,290 - ABZR88_RS08045 0.63 -0.2 1,995,303 - ABZR88_RS08045 0.64 -0.6 1,995,487 - ABZR88_RS08045 0.83 -0.2 1,995,625 - -0.3 1,995,645 - +0.3 1,995,687 - -0.0 1,995,822 + -0.5 1,995,907 + +0.0 1,995,987 - -0.1 1,996,201 + ABZR88_RS08050 0.11 -0.3 1,996,211 + ABZR88_RS08050 0.12 +0.4 1,996,221 - ABZR88_RS08050 0.12 +0.5 1,996,242 + ABZR88_RS08050 0.13 +0.4 1,996,242 + ABZR88_RS08050 0.13 +0.0 1,996,267 + ABZR88_RS08050 0.14 +0.8 1,996,303 - ABZR88_RS08050 0.15 -0.3 1,996,462 - ABZR88_RS08050 0.22 +0.5 1,996,519 + ABZR88_RS08050 0.24 -0.4 1,996,520 - ABZR88_RS08050 0.24 +0.3 1,996,572 + ABZR88_RS08050 0.26 -0.5
Or see this region's nucleotide sequence