Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08045

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08040 and ABZR88_RS08045 are separated by 71 nucleotidesABZR88_RS08045 and ABZR88_RS08050 are separated by 268 nucleotides ABZR88_RS08040: ABZR88_RS08040 - glycosyl hydrolase family 28 protein, at 1,993,232 to 1,994,593 _RS08040 ABZR88_RS08045: ABZR88_RS08045 - family 43 glycosylhydrolase, at 1,994,665 to 1,995,660 _RS08045 ABZR88_RS08050: ABZR88_RS08050 - family 43 glycosylhydrolase, at 1,995,929 to 1,998,373 _RS08050 Position (kb) 1994 1995 1996Strain fitness (log2 ratio) -2 -1 0 1at 1993.693 kb on + strand, within ABZR88_RS08040at 1993.785 kb on + strand, within ABZR88_RS08040at 1993.786 kb on - strand, within ABZR88_RS08040at 1993.917 kb on - strand, within ABZR88_RS08040at 1993.947 kb on + strand, within ABZR88_RS08040at 1994.030 kb on + strand, within ABZR88_RS08040at 1994.031 kb on - strand, within ABZR88_RS08040at 1994.044 kb on + strand, within ABZR88_RS08040at 1994.045 kb on - strand, within ABZR88_RS08040at 1994.136 kb on + strand, within ABZR88_RS08040at 1994.328 kb on - strand, within ABZR88_RS08040at 1994.420 kb on + strand, within ABZR88_RS08040at 1994.482 kb on + strandat 1994.482 kb on + strandat 1994.483 kb on - strandat 1994.801 kb on - strand, within ABZR88_RS08045at 1994.816 kb on + strand, within ABZR88_RS08045at 1995.089 kb on + strand, within ABZR88_RS08045at 1995.175 kb on - strand, within ABZR88_RS08045at 1995.289 kb on + strand, within ABZR88_RS08045at 1995.290 kb on - strand, within ABZR88_RS08045at 1995.303 kb on - strand, within ABZR88_RS08045at 1995.487 kb on - strand, within ABZR88_RS08045at 1995.625 kb on - strandat 1995.645 kb on - strandat 1995.687 kb on - strandat 1995.822 kb on + strandat 1995.907 kb on + strandat 1995.987 kb on - strandat 1996.201 kb on + strand, within ABZR88_RS08050at 1996.211 kb on + strand, within ABZR88_RS08050at 1996.221 kb on - strand, within ABZR88_RS08050at 1996.242 kb on + strand, within ABZR88_RS08050at 1996.242 kb on + strand, within ABZR88_RS08050at 1996.267 kb on + strand, within ABZR88_RS08050at 1996.303 kb on - strand, within ABZR88_RS08050at 1996.462 kb on - strand, within ABZR88_RS08050at 1996.519 kb on + strand, within ABZR88_RS08050at 1996.520 kb on - strand, within ABZR88_RS08050at 1996.572 kb on + strand, within ABZR88_RS08050

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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1,993,693 + ABZR88_RS08040 0.34 +0.4
1,993,785 + ABZR88_RS08040 0.41 -1.5
1,993,786 - ABZR88_RS08040 0.41 -0.5
1,993,917 - ABZR88_RS08040 0.50 +0.4
1,993,947 + ABZR88_RS08040 0.52 -0.6
1,994,030 + ABZR88_RS08040 0.59 -2.5
1,994,031 - ABZR88_RS08040 0.59 +0.3
1,994,044 + ABZR88_RS08040 0.60 -0.5
1,994,045 - ABZR88_RS08040 0.60 +0.4
1,994,136 + ABZR88_RS08040 0.66 +0.5
1,994,328 - ABZR88_RS08040 0.80 +0.7
1,994,420 + ABZR88_RS08040 0.87 -0.5
1,994,482 + +0.0
1,994,482 + +0.8
1,994,483 - -0.3
1,994,801 - ABZR88_RS08045 0.14 +0.1
1,994,816 + ABZR88_RS08045 0.15 +1.1
1,995,089 + ABZR88_RS08045 0.43 +1.1
1,995,175 - ABZR88_RS08045 0.51 -0.2
1,995,289 + ABZR88_RS08045 0.63 -0.1
1,995,290 - ABZR88_RS08045 0.63 -0.2
1,995,303 - ABZR88_RS08045 0.64 -0.6
1,995,487 - ABZR88_RS08045 0.83 -0.2
1,995,625 - -0.3
1,995,645 - +0.3
1,995,687 - -0.0
1,995,822 + -0.5
1,995,907 + +0.0
1,995,987 - -0.1
1,996,201 + ABZR88_RS08050 0.11 -0.3
1,996,211 + ABZR88_RS08050 0.12 +0.4
1,996,221 - ABZR88_RS08050 0.12 +0.5
1,996,242 + ABZR88_RS08050 0.13 +0.4
1,996,242 + ABZR88_RS08050 0.13 +0.0
1,996,267 + ABZR88_RS08050 0.14 +0.8
1,996,303 - ABZR88_RS08050 0.15 -0.3
1,996,462 - ABZR88_RS08050 0.22 +0.5
1,996,519 + ABZR88_RS08050 0.24 -0.4
1,996,520 - ABZR88_RS08050 0.24 +0.3
1,996,572 + ABZR88_RS08050 0.26 -0.5

Or see this region's nucleotide sequence