Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06815 and ABZR88_RS06820 are separated by 192 nucleotides ABZR88_RS06820 and ABZR88_RS06825 are separated by 6 nucleotides ABZR88_RS06825 and ABZR88_RS06830 are separated by 392 nucleotides
ABZR88_RS06815: ABZR88_RS06815 - acyl-CoA reductase, at 1,669,747 to 1,670,772
_RS06815
ABZR88_RS06820: ABZR88_RS06820 - fructose-6-phosphate aldolase, at 1,670,965 to 1,671,168
_RS06820
ABZR88_RS06825: ABZR88_RS06825 - cell division ATP-binding protein FtsE, at 1,671,175 to 1,671,855
_RS06825
ABZR88_RS06830: ABZR88_RS06830 - nucleotide exchange factor GrpE, at 1,672,248 to 1,672,841
_RS06830
Position (kb)
1671
1672 Strain fitness (log2 ratio)
-1
0
1 at 1670.212 kb on - strand, within ABZR88_RS06815 at 1670.369 kb on + strand, within ABZR88_RS06815 at 1670.434 kb on - strand, within ABZR88_RS06815 at 1670.466 kb on + strand, within ABZR88_RS06815 at 1670.642 kb on + strand, within ABZR88_RS06815 at 1670.845 kb on - strand at 1670.870 kb on + strand at 1670.880 kb on + strand at 1670.939 kb on + strand at 1670.961 kb on - strand at 1671.187 kb on - strand at 1671.195 kb on - strand at 1671.259 kb on - strand, within ABZR88_RS06825 at 1671.265 kb on - strand, within ABZR88_RS06825 at 1671.312 kb on + strand, within ABZR88_RS06825 at 1671.407 kb on + strand, within ABZR88_RS06825 at 1671.495 kb on - strand, within ABZR88_RS06825 at 1671.541 kb on - strand, within ABZR88_RS06825 at 1671.719 kb on + strand, within ABZR88_RS06825 at 1671.719 kb on + strand, within ABZR88_RS06825 at 1671.930 kb on - strand at 1672.065 kb on - strand at 1672.070 kb on - strand at 1672.150 kb on - strand at 1672.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 1,670,212 - ABZR88_RS06815 0.45 +0.3 1,670,369 + ABZR88_RS06815 0.61 -0.4 1,670,434 - ABZR88_RS06815 0.67 -0.1 1,670,466 + ABZR88_RS06815 0.70 -0.2 1,670,642 + ABZR88_RS06815 0.87 +0.1 1,670,845 - -0.1 1,670,870 + -0.8 1,670,880 + -0.5 1,670,939 + -0.3 1,670,961 - -0.8 1,671,187 - -0.3 1,671,195 - -0.5 1,671,259 - ABZR88_RS06825 0.12 -0.7 1,671,265 - ABZR88_RS06825 0.13 -0.7 1,671,312 + ABZR88_RS06825 0.20 -1.4 1,671,407 + ABZR88_RS06825 0.34 -0.2 1,671,495 - ABZR88_RS06825 0.47 -0.6 1,671,541 - ABZR88_RS06825 0.54 -1.2 1,671,719 + ABZR88_RS06825 0.80 -0.3 1,671,719 + ABZR88_RS06825 0.80 -0.8 1,671,930 - +0.2 1,672,065 - +0.4 1,672,070 - +0.0 1,672,150 - -0.2 1,672,165 - -0.2
Or see this region's nucleotide sequence