Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS04925

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS04915 and ABZR88_RS04920 are separated by 12 nucleotidesABZR88_RS04920 and ABZR88_RS04925 are separated by 7 nucleotidesABZR88_RS04925 and ABZR88_RS04930 are separated by 545 nucleotides ABZR88_RS04915: ABZR88_RS04915 - MlaD family protein, at 1,178,329 to 1,179,327 _RS04915 ABZR88_RS04920: ABZR88_RS04920 - ABC transporter ATP-binding protein, at 1,179,340 to 1,180,113 _RS04920 ABZR88_RS04925: ABZR88_RS04925 - ABC transporter permease, at 1,180,121 to 1,180,867 _RS04925 ABZR88_RS04930: ABZR88_RS04930 - aldose epimerase family protein, at 1,181,413 to 1,182,591 _RS04930 Position (kb) 1180 1181Strain fitness (log2 ratio) -2 -1 0 1 2at 1179.178 kb on + strand, within ABZR88_RS04915at 1179.179 kb on - strand, within ABZR88_RS04915at 1179.199 kb on - strand, within ABZR88_RS04915at 1179.341 kb on + strandat 1179.446 kb on - strand, within ABZR88_RS04920at 1179.523 kb on + strand, within ABZR88_RS04920at 1179.591 kb on - strand, within ABZR88_RS04920at 1179.598 kb on - strand, within ABZR88_RS04920at 1179.848 kb on - strand, within ABZR88_RS04920at 1179.852 kb on - strand, within ABZR88_RS04920at 1180.001 kb on + strand, within ABZR88_RS04920at 1180.001 kb on + strand, within ABZR88_RS04920at 1180.002 kb on - strand, within ABZR88_RS04920at 1180.069 kb on - strandat 1180.077 kb on + strandat 1180.118 kb on - strandat 1180.483 kb on + strand, within ABZR88_RS04925at 1180.517 kb on + strand, within ABZR88_RS04925at 1180.618 kb on + strand, within ABZR88_RS04925at 1180.655 kb on - strand, within ABZR88_RS04925at 1180.902 kb on - strandat 1180.907 kb on - strandat 1181.012 kb on - strandat 1181.038 kb on + strandat 1181.043 kb on + strandat 1181.091 kb on + strandat 1181.137 kb on + strandat 1181.137 kb on + strandat 1181.137 kb on + strandat 1181.183 kb on + strandat 1181.183 kb on + strandat 1181.184 kb on - strandat 1181.376 kb on - strandat 1181.468 kb on + strandat 1181.468 kb on + strandat 1181.469 kb on - strandat 1181.540 kb on - strand, within ABZR88_RS04930at 1181.576 kb on + strand, within ABZR88_RS04930at 1181.576 kb on + strand, within ABZR88_RS04930at 1181.724 kb on - strand, within ABZR88_RS04930at 1181.732 kb on - strand, within ABZR88_RS04930at 1181.784 kb on + strand, within ABZR88_RS04930at 1181.814 kb on + strand, within ABZR88_RS04930

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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1,179,178 + ABZR88_RS04915 0.85 -2.1
1,179,179 - ABZR88_RS04915 0.85 +0.4
1,179,199 - ABZR88_RS04915 0.87 +0.4
1,179,341 + +0.4
1,179,446 - ABZR88_RS04920 0.14 +0.5
1,179,523 + ABZR88_RS04920 0.24 +0.3
1,179,591 - ABZR88_RS04920 0.32 +0.5
1,179,598 - ABZR88_RS04920 0.33 -0.5
1,179,848 - ABZR88_RS04920 0.66 -0.3
1,179,852 - ABZR88_RS04920 0.66 +0.3
1,180,001 + ABZR88_RS04920 0.85 +1.1
1,180,001 + ABZR88_RS04920 0.85 -1.8
1,180,002 - ABZR88_RS04920 0.86 -0.5
1,180,069 - -0.3
1,180,077 + -1.7
1,180,118 - +0.1
1,180,483 + ABZR88_RS04925 0.48 +0.1
1,180,517 + ABZR88_RS04925 0.53 -0.5
1,180,618 + ABZR88_RS04925 0.67 -0.5
1,180,655 - ABZR88_RS04925 0.71 -1.9
1,180,902 - -0.1
1,180,907 - -0.0
1,181,012 - +0.1
1,181,038 + -0.0
1,181,043 + -0.8
1,181,091 + +2.1
1,181,137 + +1.1
1,181,137 + -0.7
1,181,137 + +0.1
1,181,183 + +2.1
1,181,183 + -0.1
1,181,184 - +0.8
1,181,376 - -0.1
1,181,468 + -0.3
1,181,468 + -0.0
1,181,469 - -0.3
1,181,540 - ABZR88_RS04930 0.11 -1.1
1,181,576 + ABZR88_RS04930 0.14 -0.3
1,181,576 + ABZR88_RS04930 0.14 +0.2
1,181,724 - ABZR88_RS04930 0.26 -0.3
1,181,732 - ABZR88_RS04930 0.27 -0.4
1,181,784 + ABZR88_RS04930 0.31 -0.0
1,181,814 + ABZR88_RS04930 0.34 +0.0

Or see this region's nucleotide sequence