Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS04915 and ABZR88_RS04920 are separated by 12 nucleotides ABZR88_RS04920 and ABZR88_RS04925 are separated by 7 nucleotides ABZR88_RS04925 and ABZR88_RS04930 are separated by 545 nucleotides
ABZR88_RS04915: ABZR88_RS04915 - MlaD family protein, at 1,178,329 to 1,179,327
_RS04915
ABZR88_RS04920: ABZR88_RS04920 - ABC transporter ATP-binding protein, at 1,179,340 to 1,180,113
_RS04920
ABZR88_RS04925: ABZR88_RS04925 - ABC transporter permease, at 1,180,121 to 1,180,867
_RS04925
ABZR88_RS04930: ABZR88_RS04930 - aldose epimerase family protein, at 1,181,413 to 1,182,591
_RS04930
Position (kb)
1180
1181 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1179.178 kb on + strand, within ABZR88_RS04915 at 1179.179 kb on - strand, within ABZR88_RS04915 at 1179.199 kb on - strand, within ABZR88_RS04915 at 1179.341 kb on + strand at 1179.446 kb on - strand, within ABZR88_RS04920 at 1179.523 kb on + strand, within ABZR88_RS04920 at 1179.591 kb on - strand, within ABZR88_RS04920 at 1179.598 kb on - strand, within ABZR88_RS04920 at 1179.848 kb on - strand, within ABZR88_RS04920 at 1179.852 kb on - strand, within ABZR88_RS04920 at 1180.001 kb on + strand, within ABZR88_RS04920 at 1180.001 kb on + strand, within ABZR88_RS04920 at 1180.002 kb on - strand, within ABZR88_RS04920 at 1180.069 kb on - strand at 1180.077 kb on + strand at 1180.118 kb on - strand at 1180.483 kb on + strand, within ABZR88_RS04925 at 1180.517 kb on + strand, within ABZR88_RS04925 at 1180.618 kb on + strand, within ABZR88_RS04925 at 1180.655 kb on - strand, within ABZR88_RS04925 at 1180.902 kb on - strand at 1180.907 kb on - strand at 1181.012 kb on - strand at 1181.038 kb on + strand at 1181.043 kb on + strand at 1181.091 kb on + strand at 1181.137 kb on + strand at 1181.137 kb on + strand at 1181.137 kb on + strand at 1181.183 kb on + strand at 1181.183 kb on + strand at 1181.184 kb on - strand at 1181.376 kb on - strand at 1181.468 kb on + strand at 1181.468 kb on + strand at 1181.469 kb on - strand at 1181.540 kb on - strand, within ABZR88_RS04930 at 1181.576 kb on + strand, within ABZR88_RS04930 at 1181.576 kb on + strand, within ABZR88_RS04930 at 1181.724 kb on - strand, within ABZR88_RS04930 at 1181.732 kb on - strand, within ABZR88_RS04930 at 1181.784 kb on + strand, within ABZR88_RS04930 at 1181.814 kb on + strand, within ABZR88_RS04930
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 1,179,178 + ABZR88_RS04915 0.85 -2.1 1,179,179 - ABZR88_RS04915 0.85 +0.4 1,179,199 - ABZR88_RS04915 0.87 +0.4 1,179,341 + +0.4 1,179,446 - ABZR88_RS04920 0.14 +0.5 1,179,523 + ABZR88_RS04920 0.24 +0.3 1,179,591 - ABZR88_RS04920 0.32 +0.5 1,179,598 - ABZR88_RS04920 0.33 -0.5 1,179,848 - ABZR88_RS04920 0.66 -0.3 1,179,852 - ABZR88_RS04920 0.66 +0.3 1,180,001 + ABZR88_RS04920 0.85 +1.1 1,180,001 + ABZR88_RS04920 0.85 -1.8 1,180,002 - ABZR88_RS04920 0.86 -0.5 1,180,069 - -0.3 1,180,077 + -1.7 1,180,118 - +0.1 1,180,483 + ABZR88_RS04925 0.48 +0.1 1,180,517 + ABZR88_RS04925 0.53 -0.5 1,180,618 + ABZR88_RS04925 0.67 -0.5 1,180,655 - ABZR88_RS04925 0.71 -1.9 1,180,902 - -0.1 1,180,907 - -0.0 1,181,012 - +0.1 1,181,038 + -0.0 1,181,043 + -0.8 1,181,091 + +2.1 1,181,137 + +1.1 1,181,137 + -0.7 1,181,137 + +0.1 1,181,183 + +2.1 1,181,183 + -0.1 1,181,184 - +0.8 1,181,376 - -0.1 1,181,468 + -0.3 1,181,468 + -0.0 1,181,469 - -0.3 1,181,540 - ABZR88_RS04930 0.11 -1.1 1,181,576 + ABZR88_RS04930 0.14 -0.3 1,181,576 + ABZR88_RS04930 0.14 +0.2 1,181,724 - ABZR88_RS04930 0.26 -0.3 1,181,732 - ABZR88_RS04930 0.27 -0.4 1,181,784 + ABZR88_RS04930 0.31 -0.0 1,181,814 + ABZR88_RS04930 0.34 +0.0
Or see this region's nucleotide sequence