Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS04735

Experiment: Pullulan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS04730 and ABZR88_RS04735 are separated by 42 nucleotidesABZR88_RS04735 and ABZR88_RS04740 are separated by 44 nucleotides ABZR88_RS04730: ABZR88_RS04730 - glycoside hydrolase family 5 protein, at 1,123,631 to 1,124,785 _RS04730 ABZR88_RS04735: ABZR88_RS04735 - sensor histidine kinase KdpD, at 1,124,828 to 1,126,174 _RS04735 ABZR88_RS04740: ABZR88_RS04740 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 1,126,219 to 1,128,306 _RS04740 Position (kb) 1124 1125 1126 1127Strain fitness (log2 ratio) -2 -1 0 1at 1124.090 kb on - strand, within ABZR88_RS04730at 1124.209 kb on - strand, within ABZR88_RS04730at 1124.310 kb on - strand, within ABZR88_RS04730at 1124.310 kb on - strand, within ABZR88_RS04730at 1124.501 kb on + strand, within ABZR88_RS04730at 1124.502 kb on - strand, within ABZR88_RS04730at 1124.516 kb on + strand, within ABZR88_RS04730at 1124.603 kb on - strand, within ABZR88_RS04730at 1124.726 kb on + strandat 1124.732 kb on + strandat 1124.950 kb on + strandat 1125.911 kb on - strand, within ABZR88_RS04735at 1126.331 kb on - strandat 1126.482 kb on + strand, within ABZR88_RS04740at 1126.862 kb on + strand, within ABZR88_RS04740at 1126.876 kb on - strand, within ABZR88_RS04740

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan (C)
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1,124,090 - ABZR88_RS04730 0.40 +0.0
1,124,209 - ABZR88_RS04730 0.50 -0.9
1,124,310 - ABZR88_RS04730 0.59 -0.1
1,124,310 - ABZR88_RS04730 0.59 -0.2
1,124,501 + ABZR88_RS04730 0.75 +0.3
1,124,502 - ABZR88_RS04730 0.75 -1.2
1,124,516 + ABZR88_RS04730 0.77 +0.7
1,124,603 - ABZR88_RS04730 0.84 -0.4
1,124,726 + +0.4
1,124,732 + +0.5
1,124,950 + +0.4
1,125,911 - ABZR88_RS04735 0.80 -2.0
1,126,331 - +0.1
1,126,482 + ABZR88_RS04740 0.13 -0.4
1,126,862 + ABZR88_RS04740 0.31 +0.6
1,126,876 - ABZR88_RS04740 0.31 +0.4

Or see this region's nucleotide sequence